Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq318 102 1e-16 >seq318 Length=230163 Score = 102 bits (112), Expect = 1e-16 Identities = 274/417 (66%), Gaps = 4/417 (1%) Strand=Plus/Minus Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814 ||||||| || |||||||| | |||||| | ||||||||||||||| |||| || || Sbjct 42773 TACTCTACGATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGTTG 42714 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874 ||||| ||| || || |||||||| ||||| || || || || ||||| | || ||| Sbjct 42713 GACTTGCGGTTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCGAC 42654 Query 118875 TTGAGAATAGCCTTCCAGACATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCCTCTT 118932 | | || || ||| || || ||| || | | ||| | | || || Sbjct 42653 TCAATGATGGCAGCCCAAACCTCTTGAGCCTTGACTTGCTTGCG--GAATTTGCCTTCAG 42596 Query 118933 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTG 118992 ||||||| || ||| | ||||| ||||| ||| | || | | || || Sbjct 42595 CCTCGTATTTCTCGTACAATCTCTCAAAGTCTTCGCCCCAGCAGTCGGCCAATCCCGGAC 42536 Query 118993 CCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 119052 || || || || | ||| ||| || |||| || || |||||||| | || Sbjct 42535 ACTCATGGGGACACATGAGGCTCCACATTCCGAATTCCTTGACGCGTTTCATGAATAAGT 42476 Query 119053 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 119112 | || ||||||||| | ||||||| || ||| | ||| || | || || || Sbjct 42475 CGGGAATCCAGAGCCCAAAGAAGAGGTCACGAGCCCTCTGTTCCTCCTTTCCGTGGTTTT 42416 Query 119113 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 119169 || | ||||| || || | ||||||||||||||||||||||| ||| | |||| Sbjct 42415 TGCGGAGATCCAAGAAATCGAAGATATCCGCGTGCCACGGTTCCAAGTAGATGGCGA 42359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618399438984560