Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq239 96.9 3e-15 >seq239 Length=840022 Score = 96.9 bits (106), Expect = 3e-15 Identities = 265/400 (66%), Gaps = 7/400 (2%) Strand=Plus/Plus Query 111718 ATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAA 111777 || || || || || ||||| ||||| || | ||| | || || | || || |||| Sbjct 247765 ATATGGTTCAAGTAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAA 247824 Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || || | || |||||||| | || | || ||| |||||||| || || ||| Sbjct 247825 CCGGTCACATGAGCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACA 247884 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 |||| |||||||| | |||||||| || | || || || | | | | ||| Sbjct 247885 CCTAATCCCATATCAGCGGATCTTTGGTACAATTGGCAGCTGAGCTCACCATTGGCCACG 247944 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCA--TAAA--GGGTCC 111953 ||||||||| ||| ||||||||| ||||| ||||| ||| | | |||| | Sbjct 247945 TAAAATTGAGCAAGACAATGACAAGGTGGCAAAGCCATTTTGCTCAGGTCAGTCGGGTTC 248004 Query 111954 CCATGCACACATGATCATCCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACATT 112013 | | ||||||||||| |||| ||| | | || | | ||| | || ||||| | Sbjct 248005 CAA-GCACACATGATGATCCGCCTGTCATCCGGCTTGTTCTTAATTTTGTCAATGACCTC 248063 Query 112014 CAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACATCCAGTG-TATGTTGCCC 112072 | |||||| || | |||| |||| ||||| || || ||| || ||| || | Sbjct 248064 CTTGAGCTGATCCACACCTTGGCCAGAGTAATCAGCATG-CATGTCTTGGTATTCCGCAC 248122 Query 112073 CATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATC 112112 || | || | |||||||||||| |||| ||| || ||||| Sbjct 248123 CAAAATGACGCCATTGGAATCCGTAAACAGGACCAAGATC 248162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391923502352038