Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq318 107 2e-18 >seq318 Length=230163 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 78195 CAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAG 78254 ||| |||||||| ||||||||||| || | ||| ||||| | ||||||| ||||| Sbjct 44418 CAAGTAGTACATTCCCGTCTTGAGGCCGACTTGCCAGCCGTAGAAGTGCATAGAGGACAG 44359 Query 78255 CTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGC 78314 |||||| | | | |||| | ||| | ||| | |||||| ||||||||| | || Sbjct 44358 CTTGGCAAAATTGGGGTCGGCGATGTGCACGTTCAATGACTGGCTCTGGTCGATAAAGGC 44299 Query 78315 ACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTA 78374 |||||||| |||| ||| | || ||| | ||||| |||||||||| ||| ||| Sbjct 44298 TCCGCGGTCAGCCGACATCTTGAGGACGGTTTTTTGGCTGATCTCCCAGACGGTTTTGTA 44239 Query 78375 AATGGCCTTCAGCTCTTCCTGGATGTC 78401 | |||||| | ||| || |||| || Sbjct 44238 GAGGGCCTTGATCTCGGCCGGGATCTC 44212 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/229 (70%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 20592 TCCAGGCATTG--GATATCCC---CCAGAACCTCAAGGACATTTACAGGACCGTATGGGA 20646 || |||||||| || ||||| | ||| |||||| | | |||| ||||| ||||| Sbjct 44199 TCAAGGCATTGAAGAGATCCCGGCCGAGA---TCAAGGCCCTCTACAAAACCGTCTGGGA 44255 Query 20647 AATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTC 20706 ||| || || | | || || | ||| |||| || ||||| |||| ||||||||| Sbjct 44256 GATCAGCCAAAAAACCGTCCTCAAGATGTCGGCTGACCGCGGAGCCTTTATCGACCAGAG 44315 Query 20707 CCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATAT 20766 |||||| | || || ||| | | || | | || |||||| ||| ||||| | Sbjct 44316 CCAGTCATTGAACGTGCACATCGCCGACCCCAATTTTGCCAAGCTGTCCTCTATGCACTT 44375 Query 20767 GTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACC 20815 ||||||||||| || ||||||||||| |||||||| || ||||| Sbjct 44376 CTACGGCTGGCAAGTCGGCCTCAAGACGGGAATGTACTACTTGAGGACC 44424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548493081553440