Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq244 84.2 2e-11 >seq244 Length=710267 Score = 84.2 bits (92), Expect = 2e-11 Identities = 200/299 (67%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| |||| ||| |||||||||||| |||| || || ||||||||| Sbjct 439981 GTGAAAATGTAACGGGGAGAGGCGTGATCCTTGCCACCGGCCAAGCGGGTGCCAAACTGT 439922 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | | | |||| ||| |||| || || || | ||||||||| | Sbjct 439921 CCAATGGGTTGCAACAAATTGATGTTATTGGACCCAACAAAGTCTTGAGCCAAACCAATG 439862 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || ||| ||| ||||| ||||||||||| || || ||| | | | |||| Sbjct 439861 ATGGTTCCCATCAGTGATGCTTCTCCGTGGTGATAGGCACTCATCTCGCCCACGGATCCG 439802 Query 152209 GCCAACTGCGCCACCTTCATGTC-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 ||||| || || || || | || || | |||| || ||| ||||| | | | || | Sbjct 439801 GCCAATTGGGCAACTTTGACTTCACGTTTGTCA--TTTCGCTTAAGACAAGTGAACATGA 439744 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 | || || ||| || || || || || || || || || ||||| | | ||||| Sbjct 439743 CTTTACGTTGGCCAGGCTTGAACCCATCGACGACACAGGGTATGGAACGTTCGTTGTCC 439685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547184357234800