Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq275 192 7e-44 seq282 181 1e-40 seq318 150 2e-31 seq285 129 7e-25 seq311 118 1e-21 seq243 116 4e-21 seq244 86.0 7e-12 >seq275 Length=453286 Score = 192 bits (212), Expect = 7e-44 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| || || |||||||||||| | Sbjct 384523 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACGATCACCCTTGAGGTTGAGCCGTCC 384464 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | |||||||| || || ||||||||||| ||||| ||||| ||| Sbjct 384463 GATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 384404 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || ||||| |||||| | ||||||| ||||| || ||||||| || Sbjct 384403 CAACGTTTGATCTTCGCTGGCAAGCAATTGGAGGATGGGCGTACTCTCTCAGACTACAAC 384344 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| || |||||||| | || ||||||||||| ||||| ||| Sbjct 384343 ATCCAGAAGGAGTCTACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGCCAA 384293 Score = 170 bits (188), Expect = 2e-37 Identities = 166/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || || | || || ||||| || || || ||||||||| | Sbjct 384752 AATGCAGATCTTCGTAAAAACTTTAACTGGAAAGACCATCACCCTCGAGGTTGAGCCTTC 384693 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | |||| | |||||||| || || ||||||||||| ||||| |||||||| Sbjct 384692 TGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 384633 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| | || |||||||| |||||| | ||||||| || ||||| | ||||| || Sbjct 384632 GCAACGTTTGATCTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCCTCTCTGACTACAA 384573 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | |||| |||||||| || ||||| | |||||| Sbjct 384572 TATCCAGAAGGAATCTACCCTTCACTTGGTCTTG 384539 >seq282 Length=398316 Score = 181 bits (200), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||||||||| || ||||||||||| ||||| || ||||||||| | Sbjct 140777 AATGCAAATCTTTGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTTGAGGCCTC 140718 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | ||||| ||||| || ||||||||||| ||||| ||||| || Sbjct 140717 CGACACCATCGAAAACGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCAGATCA 140658 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATA 27583 ||| ||| | || |||||||| |||||||| || |||| |||||||| ||| || || | Sbjct 140657 GCAACGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGAGC-GATTACA 140599 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||||| || || | ||| | || | ||||| || ||||| Sbjct 140598 ACATCCAAAAGGAGTCTACATTGCATTTGGTTCTCCGTCTCCGTGGTGG 140550 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || |||||||| ||||| | ||||| || | Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||||| || || || ||||| ||||||||||||||||| || Sbjct 140488 GACACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAA 140429 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | |||||||| || || |||||||| |||| || || | |||||||||| Sbjct 140428 CAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCAGACTATAAC 140369 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | ||||| ||||| ||||||||||| || | ||| | | |||||||| Sbjct 140368 ATTCAAAAAGAATCAACTCTTCATCTTGTACTTCGTTTGAGAGGTGGACA 140319 >seq318 Length=230163 Score = 150 bits (166), Expect = 2e-31 Identities = 151/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 80945 TAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGT 81004 || |||| ||||| |||||||| | || || ||||||| || |||| || | ||||| Sbjct 42775 TATACTCTACGATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGT 42716 Query 81005 TTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTG 81064 | |||||| ||||||||||||||||||| ||| || || ||||| ||||| | ||| | Sbjct 42715 TGGACTTGCGGTTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCG 42656 Query 81065 ACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGG 81124 ||| | |||||| |||||| ||| | |||||||| |||||||||||||||||| | Sbjct 42655 ACTCAATGATGGCAGCCCAAACCTCTTGAGCCTTGACTTGCTTGCGGAATTTGCCTTCAG 42596 Query 81125 CCACATACTTGGCGTA 81140 || | || || |||| Sbjct 42595 CCTCGTATTTCTCGTA 42580 >seq285 Length=381527 Score = 129 bits (142), Expect = 7e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || ||||| || || || ||||| || || || || ||||| ||| | Sbjct 34318 AATGCAGATTTTCGTCAAAACCCTCACGGGCAAAACCATCACCCTCGAGGTGGAGCCCTC 34377 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| |||| | |||||||| || || ||||||||||||||||||||||| || Sbjct 34378 TGACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCA 34437 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGA 27563 ||| ||| | || |||||||| |||||| | || || || Sbjct 34438 GCAACGTTTGATCTTTGCTGGCAAGCAATTGGAAGAGGA 34476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 27503 AGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||||||||||||||||||||||||| ||| | || |||||||| |||||| | || |||| Sbjct 34473 AGGAGGGAATTCCTCCAGACCAGCAACGTTTGATCTTTGCTGGCAAGCAATTGGAAGATG 34532 Query 27563 ATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 |||||| | | ||||| || ||||||| Sbjct 34533 GACGTACCTTGTCCGACTACAACATCCAAAA 34563 >seq311 Length=259814 Score = 118 bits (130), Expect = 1e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | |||| | |||||||| || || |||||||| || ||||| ||||| || Sbjct 106260 TGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCA 106201 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| | || ||||| || |||||| | ||||||| || || || | ||||| || Sbjct 106200 GCAACGTTTGATCTTTGCCGGCAAGCAATTGGAGGATGGCCGCACTCTCTCCGACTACAA 106141 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| |||||||||||| | ||| | || | ||| | || || || Sbjct 106140 TATCCAGAAGGAATCCACTTTACATTTGGTTCTACGTTTGCGAGGAGG 106093 >seq243 Length=773012 Score = 116 bits (128), Expect = 4e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || | || || ||||| ||||| || ||||| ||| | Sbjct 551983 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAGACCATTACCCTCGAGGTAGAGCCTTCC 552042 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||||| |||||||||||||||||||||||| Sbjct 552043 GATACTATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCAGACCAG 552102 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 || | | ||||| || || || ||||||||||||| Sbjct 552103 CAAAGGTTGATTTTCGCCGGAAAACAACTCGAGGATG 552139 >seq244 Length=710267 Score = 86.0 bits (94), Expect = 7e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 32092 GCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTT 32151 |||||||||||||| || || || || ||| ||||| | | ||||| ||||| Sbjct 439824 GCCTATCACCACGGAGAAGCATCACTGATGGGAACCATCATTGGTTTGGCTCAAGACTTT 439883 Query 32152 GTCGGTGCAAATAACCTGAACTTACT-CGAGCCATCTGGACAGTTTGGGACCCGGCTCGC 32210 || || | |||||| | || || | | | |||| |||||||||||| ||||| | || Sbjct 439884 GTTGGGTCCAATAACATCAATTTGTTGCAACCCAT-TGGACAGTTTGGCACCCGCTTGGC 439942 Query 32211 CGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCC 32251 ||||||||||||| || |||||||||| ||||||| Sbjct 439943 CGGTGGCAAGGATCACGCCTCTCCCCGTTACATTTTCACCC 439983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570277421801120