Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq239 179 3e-40 >seq239 Length=840022 Score = 179 bits (198), Expect = 3e-40 Identities = 420/631 (67%), Gaps = 2/631 (0%) Strand=Plus/Plus Query 29773 CTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCT 29832 ||||| || | ||| || ||| ||||| || | | |||| | | | | || ||| Sbjct 247653 CTCCATGGCCAGATCTTCAAACTTGAAGTCTTCAATGTTCTCAATCTTTCGCTTGATCAC 247712 Query 29833 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATC 29892 || |||| || || | || || | || ||||||||||||| | || | | | Sbjct 247713 AAGCTTGGGGAACGGCTTAGGTTCACGTTCAAGCTGAGTCTTCAAAGCGTCGATATGGTT 247772 Query 29893 CAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGAC 29952 || |||||| ||||| || || ||| | || ||||| ||||| | | | ||||| || Sbjct 247773 CAAGTAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAACCGGTCAC 247832 Query 29953 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCC 30012 ||||| ||||| | || | || | || || ||||| || ||||| || | || Sbjct 247833 ATGAGCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACACCTAATCC 247892 Query 30013 CATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG 30072 ||| || | || || ||||| | || || |||||| || | | ||||||||| || Sbjct 247893 CATATCAGCGGATCTTTGGTACAATTGGCAGCTGAGCTCACCATTGGCCACGTAAAATTG 247952 Query 30073 ACACATGGC-GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGC 30131 | || | | || || || || | |||||| || || ||| | |||||||| || | Sbjct 247953 A-GCAAGACAATGACAAGGTGGCAAAGCCATTTTGCTCAGGTCAGTCGGGTTCCAAGCAC 248011 Query 30132 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCT 30191 ||| |||||| |||||||| || || |||||| | || ||| | | | | | |||| Sbjct 248012 ACATGATGATCCGCCTGTCATCCGGCTTGTTCTTAATTTTGTCAATGACCTCCTTGAGCT 248071 Query 30192 GATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCC 30251 ||||||| || || ||||| || || |||||| ||| || || || ||||| | Sbjct 248072 GATCCACACCTTGGCCAGAGTAATCAGCATGCATGTCTTGGTATTCCGCACCAAAATGAC 248131 Query 30252 TCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT 30311 ||| ||||| ||||| || || || || || |||| | || || || || Sbjct 248132 GCCATTGGAATCCGTAAACAGGACCAAGATCATTGACTTCACGATGAGTCAATCCTTGCT 248191 Query 30312 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCT 30371 |||||| ||||||||| || || ||||| ||||| ||| || ||| ||||| | | Sbjct 248192 TGTCCAGAAAGTCTCTTGATCCATTGGCATCCCAAATCCGGACGTTCTTTTCAGACAATT 248251 Query 30372 CTTTGGAGTTTGTGGACCCTCTGACGAACCA 30402 | ||| || || || || | || |||||| Sbjct 248252 CATTGCCATTGGTTGAACCACGGATGAACCA 248282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406287492473592