Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq282 149 5e-31 seq240 134 1e-26 seq311 100 2e-16 seq285 95.1 1e-14 seq252 89.7 4e-13 >seq282 Length=398316 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| ||||||||| | ||||| || || || || | ||| Sbjct 140776 ATGCAAATCTTTGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTTGAGGCCTCC 140717 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||||| |||||||| || ||||| || || ||||| Sbjct 140716 GACACCATCGAAAACGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 140657 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || ||||| ||| ||||||| | ||| | |||||||||| Sbjct 140656 CAACGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGAGCGATTACAAC 140597 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || || ||||||||| | ||| | || ||||| || Sbjct 140596 ATCCAAAAGGAGTCTACATTGCATTTGGTTCTCCGTCTCCGTGGTGGTAT 140547 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| |||||| | ||||| | || |||||| | ||| Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || ||||||||||| || || || || |||||| Sbjct 140488 GACACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAA 140429 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||| |||||| | ||||| | || | || || || ||| Sbjct 140428 CAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCAGACTATAAC 140369 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || || | ||| | || | |||||| | ||||| Sbjct 140368 ATTCAAAAAGAATCAACTCTTCATCTTGTACTTCGTTTGAGAGGTGG 140322 >seq240 Length=835721 Score = 134 bits (148), Expect = 1e-26 Identities = 180/248 (73%), Gaps = 12/248 (5%) Strand=Plus/Plus Query 49780 GGACTAGAAGGTTTGGTACTAAAACCGATC--AATTCTGTATACGCACCCGGTAAAAGAC 49837 || || ||||| ||||| || ||| |||| || | |||||| || || || | | Sbjct 443482 GGTCTGGAAGGATTGGTTCTTAAA--GATCTGAAAAGTATATACGAGCCAGGCAAGCGTC 443539 Query 49838 ATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGCCATGGCCGATAGCGTTGATT 49897 ||||||||||| | |||||||| ||||| ||| || || ||||| ||| | ||||| Sbjct 443540 ATTGGTTGAAAGTCAAAAAAGATTACTTACACGAGGGTGCTATGGCTGATTCGGCTGATT 443599 Query 49898 TGGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGGTGGCTTCTTGTCTACATTTT 49957 ||||||| ||||| |||||||| || || ||||| || | || |||||| ||||| Sbjct 443600 TGGTGGTCTTGGGCGCATGGTATGGGTCAGGAAAGCGTGGAAGTATCATGTCTATATTTT 443659 Query 49958 TGATGGGATGTCTCGACA----CAAACCGAAACGTTTGGACGACAGTAACAAAGGTGCAC 50013 ||||||| |||||||| | ||| ||||| |||| ||||| || || ||||| Sbjct 443660 TGATGGGCTGTCTCGATAAGGCCAAGTCGAAA----TGGAAAACAGTGACTAAAGTGCAT 443715 Query 50014 ACAGGCCA 50021 || ||||| Sbjct 443716 ACGGGCCA 443723 >seq311 Length=259814 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || |||||||| ||||| || || || ||||| || ||||| || | |||||||| Sbjct 106235 AAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGCAAG 106176 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 |||||||| || | || | ||||| ||||| || || ||||| || || |||||| Sbjct 106175 CAATTGGAGGATGGCCGCACTCTCTCCGACTACAATATCCAGAAGGAATCCACTTTACAT 106116 Query 27192 TTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| | |||||||| || || Sbjct 106115 TTGGTTCTACGTTTGCGAGGAGG 106093 >seq285 Length=381527 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || ||||| | || || || || ||||| || || Sbjct 34319 ATGCAGATTTTCGTCAAAACCCTCACGGGCAAAACCATCACCCTCGAGGTGGAGCCCTCT 34378 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||| || || || || || ||||| Sbjct 34379 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 34438 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 || ||||| || | || ||||| ||||||||||| Sbjct 34439 CAACGTTTGATCTTTGCTGGCAAGCAATTGGAAGA 34473 >seq252 Length=615714 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 135506 GAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCT 135565 ||||| ||||| || ||||| ||||| ||||||||||| |||||||| |||| ||| | Sbjct 534329 GAAGGTAAAATTCATGGATTCATGCGGATGTATTGGGCCAAAAAGATCCTGGAGTGGACC 534388 Query 135566 GCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGAT 135625 | || | ||| || | || || | | |||||||| | ||| ||| ||| Sbjct 534389 CGAAATCCAGAAGAAGCCTTGGAATTTGCTCTTTACTTTAATGACAAGTACTCTTTGGAT 534448 Query 135626 GGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAA 135685 ||| || || ||||| | || ||||| |||||||| ||| ||| | || |||||| Sbjct 534449 GGATCGGACTCTAATGGTTTTGTTGGTTGCATGTGGTCCATTGTCGGAATTCATGATCAA 534508 Query 135686 GGATGGA 135692 || |||| Sbjct 534509 GGCTGGA 534515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434893250843520