Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq239 161 9e-35 >seq239 Length=840022 Score = 161 bits (178), Expect = 9e-35 Identities = 350/519 (67%), Gaps = 6/519 (1%) Strand=Plus/Plus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATC--CGGAGCCGCTCGATGTGGT 6557 |||| ||||||||| || || |||| ||||| || | ||| ||||| |||| Sbjct 247714 AGCTTGGGGAACGGCTTAGGTTCACGTTCAAGCTGAGTCTTCAAAGCG--TCGATATGGT 247771 Query 6558 TCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGA 6617 ||| ||||| ||| ||||| || | ||||| || | || |||| ||| || | Sbjct 247772 TCAAGTAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAACCGGTCA 247831 Query 6618 CATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACC 6677 ||||||| ||||| | || | || || ||| ||||||||||| || || ||||| | Sbjct 247832 CATGAGCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACACCTAATC 247891 Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATT 6737 |||| || | |||| ||| || | |||||| ||||| ||||| || ||||| |||| Sbjct 247892 CCATATCAGCGGATCTTTGGTACAATTGGCAGCTGAGCTCACCATTGGCCACGTAAAATT 247951 Query 6738 G-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 | ||| || || || || || | ||||| || || |||||||||| || Sbjct 247952 GAGCA-AGACAATGACAAGGTGGCAAAGCCATTTTGCTCAGGTCAGTCGGGTTCCAAGCA 248010 Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGC 6856 ||||| | ||||| |||||||| || || ||| | |||| || || | || ||| Sbjct 248011 CACATGATGATCCGCCTGTCATCCGGCTTGTTCTTAATTTTGTCAATGACCTCCTTGAGC 248070 Query 6857 TGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGT 6916 || ||| | || || || || || || || | | | | || ||||| ||||| || Sbjct 248071 TGATCCACACCTTGGCCAGAGTAATCAGCATGCATGTCTTGGTATTCCGCACCAAAATGA 248130 Query 6917 CTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGC 6976 | ||| ||||| ||||| || || || | || | || ||| | || || || Sbjct 248131 CGCCATTGGAATCCGTAAACAGGACCAAGATCATTGACTTCACGATGAGTCAATCCTTGC 248190 Query 6977 TTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATC 7015 |||||||||||||||| || || | || ||||| ||| Sbjct 248191 TTGTCCAGAAAGTCTCTTGATCCATTGGCATCCCAAATC 248229 Score = 161 bits (178), Expect = 9e-35 Identities = 350/519 (67%), Gaps = 6/519 (1%) Strand=Plus/Minus Query 34330 GATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGA 34389 ||| ||||| || | || || |||||||||||||||||| || || | ||| || Sbjct 248229 GATTTGGGATGCCAATGGATCAAGAGACTTTCTGGACAAGCAAGGATTGACTCATCGTGA 248170 Query 34390 GGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCG 34449 | || | || || || ||||| ||||| ||| | || ||||| ||||| || | Sbjct 248169 AGTCAATGATCTTGGTCCTGTTTACGGATTCCAATGGCGTCATTTTGGTGCGGAATACCA 248110 Query 34450 GGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACAC 34509 | | | || || || || || || || | ||| ||||| || | || || |||| Sbjct 248109 AGACATGCATGCTGATTACTCTGGCCAAGGTGTGGATCAGCTCAAGGAGGTCATTGACAA 248050 Query 34510 CTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCT 34569 | ||| || || |||||||| ||||| | ||||| || |||||||||| || || Sbjct 248049 AATTAAGAACAAGCCGGATGACAGGCGGATCATCATGTGTGCTTGGAACCCGACTGACCT 247990 Query 34570 CCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAATGGGG 34628 ||||| | || || || || || ||| ||||| ||||| || ||||| | Sbjct 247989 GAGCAAAATGGCTTTGCCACCTTGTCATTGTCT-TGCTCAATTTTACGTGGCCAATGGTG 247931 Query 34629 AGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACA 34688 |||| |||||| | || ||| |||| | || ||||| ||||| || || ||||||| Sbjct 247930 AGCTCAGCTGCCAATTGTACCAAAGATCCGCTGATATGGGATTAGGTGTACCTTTCAACA 247871 Query 34689 TTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGG 34748 |||| ||| || || | || | ||||| |||||||| || ||| |||| | Sbjct 247870 TTGCATCTTATGCCCTTTTGACTCATATGATTGCTCATGTGACCGGTTTGAAGACTGGAG 247811 Query 34749 AGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCG-- 34806 | | || ||||| | || ||||| ||| ||||| ||||||| ||||| ||| | Sbjct 247810 ACTTTGTTCATACCCTCGGCGATGCTCATGTCTACTTGAACCATATCGA--CGCTTTGAA 247753 Query 34807 GATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 || ||||| |||| || || ||||||||| |||| Sbjct 247752 GACTCAGCTTGAACGTGAACCTAAGCCGTTCCCCAAGCT 247714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448236479226720