Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq239 125 6e-24 >seq239 Length=840022 Score = 125 bits (138), Expect = 6e-24 Identities = 445/685 (65%), Gaps = 19/685 (3%) Strand=Plus/Plus Query 118377 ATCTTCAAACTTAAAGTCTTCTATATTTTTGATATCCTTGTTTATGGATAGTGTGGGAAA 118436 |||||||||||| |||||||| || || | || | || || || |||| || Sbjct 247665 ATCTTCAAACTTGAAGTCTTCAATGTTCTCAATCTTTCGCTTGATCACAAGCTTGGGGAA 247724 Query 118437 CGGGAGAGGCTCCCTTGTGAGTTGGAGT-TTCAGTGGCTCAATGTGATTCATATAGACAT 118495 ||| ||| || | | || || ||| |||| | || || || |||| ||||||| Sbjct 247725 CGGCTTAGGTTCACGTTCAAGCTG-AGTCTTCAAAGCGTCGATATGGTTCAAGTAGACAT 247783 Query 118496 GAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCA 118555 ||||||| || | ||||| | || || |||| | | || |||| |||||||||| Sbjct 247784 GAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAACCGGTCACATGAGCAATCA 247843 Query 118556 TGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTG 118615 | | ||||| | || || | || ||||| ||||| | ||||| || || | Sbjct 247844 TATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACACCTAATCCCATATCAGCGG 247903 Query 118616 ATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGT 118675 |||| |||||||||||||| |||||| || || || || ||||| ||| | | Sbjct 247904 ATCTTTGGTACAATTGGCAGCTGAGCTCACCATTGGCCACGTAAAATTGAGCAAGACAAT 247963 Query 118676 GACATGGAGGCAGAACCATGGAACTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG-- 118733 |||| || |||| | |||| ||||| | | || ||||| || | ||||| Sbjct 247964 GACAAGGTGGCAAAGCCATTTTGCTCAGGTCAGTCGGGTTCCAAGC-----ACACATGAT 248018 Query 118734 ---CCTTCTGCTATATGGTTCTACCTGTATACCCTCAATTAAATTCTGAATCTGATCCAC 118790 || ||| || || | || || ||||| | | || | ||||||||| Sbjct 248019 GATCCGCCTGTCATCCGGCTTGTTCTTAATTTTGTCAATGACCTCCTTGAGCTGATCCAC 248078 Query 118791 ACCCTTTCCAGTATACTGAGACTCGCAT-CCTTTATATTCTGCCCCAAAAAATCTCCATT 118849 ||| | |||| || | || | |||| ||| ||||| || |||||| | ||||| Sbjct 248079 ACCTTGGCCAGAGTAATCAG-CATGCATGTCTTGGTATTCCGCACCAAAATGACGCCATT 248137 Query 118850 GAAAACCATAAACAGGCCCCAGATC--TCCCTGGGACCTAAAATCTAAACCTACTTTTCT 118907 | || || |||||||| || ||||| | || || | || | | | ||| || Sbjct 248138 GGAATCCGTAAACAGGACCAAGATCATTGACT-TCACGATGAGTCAATCCTTGCTTGTC- 248195 Query 118908 CTGAAATTCTTTTGACCCATTAGCATTCCAAATAGCAACTCCtttttttGCCAGATCATT 118967 | |||| ||| |||| ||||| |||| |||||| || |||| | || ||||| Sbjct 248196 CAGAAAGTCTCTTGATCCATTGGCATCCCAAATCCGGACGTTCTTTTCAGACAATTCATT 248255 Query 118968 AGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAAC 119027 || || ||||||| | ||||||| ||| || || ||| ||||| |||||| Sbjct 248256 GCCATTGGTTGAACCACGGATGAACCAAAAAAGTTCTTCTGCAATGCCTCGCCAAAAGGT 248315 Query 119028 TGTTTTTGTTGT-AAACAGTGGAAA 119051 | |||| ||||| || || ||||| Sbjct 248316 TTTTTTGGTTGTCAATAAGGGGAAA 248340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414453432057064