Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq282 172 1e-37 seq275 152 1e-31 seq285 134 3e-26 seq243 107 4e-18 seq311 96.9 8e-15 >seq282 Length=398316 Score = 172 bits (190), Expect = 1e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| ||||||||||| ||||| ||||| | |||||||||||| |||||||| Sbjct 140580 GTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCCAGTTGCTTGCCA 140639 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | ||||| || || || |||| || |||||||| ||||| || || Sbjct 140640 GCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTG 140699 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||||||||||||||| ||| ||||||||||| || || ||||| || ||||||||| Sbjct 140700 ACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTC 140759 Query 211098 TTTACAAACACCTGCATTTT 211117 || ||||| | |||||||| Sbjct 140760 TTGACAAAGATTTGCATTTT 140779 >seq275 Length=453286 Score = 152 bits (168), Expect = 1e-31 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | |||||| || || || || ||||| || || || | ||||| | || Sbjct 384536 TCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGGCC 384595 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| |||||||| || ||||| | ||||| ||||| || |||| || ||||| Sbjct 384596 ATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGAATGCCCTCCTT 384655 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || || ||||||||||| ||||| ||||||||||| ||||| Sbjct 384656 GTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACCTCGAGGGTGAT 384715 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| || | ||| ||||| || | ||||||| Sbjct 384716 GGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCATT 384752 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || | ||||||||| ||||| || |||||||| || || | || || Sbjct 384302 ACGAAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGT 384361 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| |||||||| |||||||| | ||||| || || || |||| || Sbjct 384362 ACGCCCATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCC 384421 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| || || ||||| ||||| || || |||||||| || Sbjct 384422 CTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAG 384481 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| || || | |||||| || || | ||||| Sbjct 384482 GGTGATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 384523 >seq285 Length=381527 Score = 134 bits (148), Expect = 3e-26 Identities = 130/166 (78%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 ||| ||| ||||||| |||||||| || ||||| | ||||| || || ||||||| || Sbjct 34480 TCCCTCC-TCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTC 34422 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | |||||||| |||||||| || || ||||| |||||||||||| || ||||||| Sbjct 34421 CCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGA 34362 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | ||||| || || |||||||| || || || || | ||||||||| Sbjct 34361 GGGTGATGGTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCATTTT 34316 >seq243 Length=773012 Score = 107 bits (118), Expect = 4e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 ||||||| ||||| || || | ||| | | | ||||| || || || || || ||||| Sbjct 552172 CTTTTTGAATGTTGTAGTCACTCAAAG-TGCGGCCATCCTCGAGTTGTTTTCCGGCGAAA 552114 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || | | ||| ||||| ||||||| ||| ||||| ||||||||||| || || ||| Sbjct 552113 ATCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTT 552054 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 ||||| || || || || |||||||| || || ||||| ||||| | ||| || || Sbjct 552053 TCGATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACG 551994 Query 211104 AACACCTGCAT 211114 || | |||||| Sbjct 551993 AAAATCTGCAT 551983 >seq311 Length=259814 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 |||||| || || ||||| || || || | || || | ||||| |||| |||||||| Sbjct 106122 AGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCCTCCAATTGCTTGCC 106181 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| | ||||| || || || |||| ||||||||||| |||||||| || Sbjct 106182 GGCAAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTAGCCTT 106241 Query 211037 CACGTTTTCGATGGTGTCAGA 211057 || ||||||||||| ||||| Sbjct 106242 GACATTTTCGATGGTATCAGA 106262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159083296336490