Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq282 132 3e-26 seq285 114 9e-21 seq311 111 1e-19 seq243 82.4 5e-11 >seq282 Length=398316 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || || || ||||| || || || || || ||||| ||||| || Sbjct 140779 AAAATGCAAATCTTTGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTTGAGGCC 140720 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || ||||| ||||| || || | || |||||| Sbjct 140719 TCCGACACCATCGAAAACGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCAGAT 140660 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || ||||| || ||||| ||||| ||||||||||| | ||| || | |||||||| Sbjct 140659 CAGCAACGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGAGCGATTAC 140600 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| ||||| ||||| ||||| ||||| ||| Sbjct 140599 AACATCCAAAAGGAGTCTACATTGCATTTGGTT 140567 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||| || || || ||||| || | || || || || | Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || |||||||| || | || ||||||||| Sbjct 140488 GACACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAA 140429 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || |||||||| |||||||| ||||| | ||||| || || || ||| Sbjct 140428 CAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCAGACTATAAC 140369 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || |||||||| || || | ||| | || | | ||| |||| ||| Sbjct 140368 ATTCAAAAAGAATCAACTCTTCATCTTGTACTTCGTTTGAGAGGTGGA 140321 >seq285 Length=381527 Score = 114 bits (126), Expect = 9e-21 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || || || Sbjct 34316 AAAATGCAGATTTTCGTCAAAACCCTCACGGGCAAAACCATCACCCTCGAGGTGGAGCCC 34375 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||||| | || || || ||||| || || | || |||||| Sbjct 34376 TCTGACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGAT 34435 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGA 23768 || || ||||| || ||||| ||||| ||| ||||||| || Sbjct 34436 CAGCAACGTTTGATCTTTGCTGGCAAGCAATTGGAAGAGGA 34476 >seq311 Length=259814 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| |||||| | || |||||||| || ||||| || ||||||||||| ||| |||| Sbjct 106226 GACAAGGAAGGTATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGCAAGCAATTGGAG 106167 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | |||||| | ||| ||||| || || || || ||||| |||||||| ||| || Sbjct 106166 GATGGCCGCACTCTCTCCGACTACAATATCCAGAAGGAATCCACTTTACATTTGGTTCTA 106107 Query 23824 AGGTTGCGAGGAGG 23837 | ||||||||||| Sbjct 106106 CGTTTGCGAGGAGG 106093 >seq243 Length=773012 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| | ||||| || || || || ||||| || || | | Sbjct 551983 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAGACCATTACCCTCGAGGTAGAGCCTTCC 552042 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| | || || || || || || || | || ||||| || Sbjct 552043 GATACTATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCAGACCAG 552102 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || || ||||| |||||||| || || | |||||||| | || |||||| Sbjct 552103 CAAAGGTTGATTTTCGCCGGAAAACAACTCGAGGATGGCCGCACTTTGAGTGACTACAAC 552162 Query 23791 ATACAAAAAG 23800 || ||||||| Sbjct 552163 ATTCAAAAAG 552172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337990543230008