Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq275 140 8e-28 seq282 134 3e-26 seq285 114 3e-20 seq311 111 4e-19 seq243 104 6e-17 seq295 84.2 5e-11 >seq275 Length=453286 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| ||||| || || || |||| ||||| || | | ||| Sbjct 384302 ACGAAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGT 384361 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||| || | ||||| ||||||||||| | ||||| || || || ||||| || Sbjct 384362 ACGCCCATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCC 384421 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||| ||| ||| ||||| || || | || || || | Sbjct 384422 CTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAG 384481 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || |||||||| || | ||| | |||||| Sbjct 384482 GGTGATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 384523 Score = 140 bits (154), Expect = 8e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| || || ||||| || |||| |||||| || | | || | || Sbjct 384536 TCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGGCC 384595 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| || | ||||| ||||| ||||| | ||||| ||||| || ||||| || ||||| Sbjct 384596 ATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGAATGCCCTCCTT 384655 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| ||||||||| || || | || || || | ||||| Sbjct 384656 GTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACCTCGAGGGTGAT 384715 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || |||||||||| ||| | |||||| Sbjct 384716 GGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCATT 384752 >seq282 Length=398316 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || ||||| ||||||||||| | || || || | ||| || | |||||| Sbjct 140337 AGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGGCCATCT 140396 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || || || | |||||||| || || ||||| || || |||||| Sbjct 140397 TCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCT 140456 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || || ||||| |||| |||||| || || || |||||| Sbjct 140457 TGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCACCTCCAAGGTAATCGTC 140516 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | || | |||||| Sbjct 140517 TTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || ||||||| ||||||||| || || | |||||||| || ||||| ||| Sbjct 140580 GTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCCAGTTGCTTGCCA 140639 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | ||||| || || || ||||| || |||||||||||||| || ||| Sbjct 140640 GCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTG 140699 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || |||||||||||| |||| || || || | || || |||||||| || | ||| Sbjct 140700 ACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTC 140759 Query 225697 TTTATGAACACTTGCATTTT 225716 || | || | ||||||||| Sbjct 140760 TTGACAAAGATTTGCATTTT 140779 >seq285 Length=381527 Score = 114 bits (126), Expect = 3e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 225551 TTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATAC 225610 ||| | | ||||| | ||||| ||||| ||||| | ||||| || || || ||||| | Sbjct 34481 TTCCCTCCTCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTC 34422 Query 225611 CTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 | ||||||||||||||||| ||| ||| ||| |||||||| |||| ||||| || | Sbjct 34421 CCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGA 34362 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || |||||||| | ||||| | ||| | |||||||| Sbjct 34361 GGGTGATGGTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCATTTT 34316 >seq311 Length=259814 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||||||||| || |||| |||||| |||| | ||| | ||||| || | ||||| || Sbjct 106122 AGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCCTCCAATTGCTTGCC 106181 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 || ||||| | ||||| || || || |||||||||||||||||||||||||| ||| Sbjct 106182 GGCAAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTAGCCTT 106241 Query 225636 CACAGCTTCGATGGTGTCTGA 225656 ||| ||||||||| || || Sbjct 106242 GACATTTTCGATGGTATCAGA 106262 >seq243 Length=773012 Score = 104 bits (114), Expect = 6e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||| | ||||| || |||||| | ||||| || || || || || ||||| | Sbjct 552172 CTTTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAA 552113 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | | ||| ||||| || ||||| || ||||| || |||||||| ||| ||| || Sbjct 552112 TCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTT 552053 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 |||| || || || | || || || | || || ||||| |||||||||||||| | || Sbjct 552052 CGATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGA 551993 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 551992 AAATCTGCAT 551983 >seq295 Length=325128 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 371039 GTCGACATTTCTAGATTTTGTTTTCATGAAAAATTATCTATTGCAGGTAATTGTCGTATG 371098 || || ||| | |||||||||| ||||||| |||||| ||||| || |||||||| ||| Sbjct 24597 GTAGAAATTCCCAGATTTTGTTACCATGAAAGATTATCAATTGCTGGAAATTGTCGAATG 24656 Query 371099 TGTTTGGTGGAGGATTTAAAACAAGTTAAACCTTTAGCCTCCTGTG 371144 |||||||| |||| | |||| | |||||| |||| | |||| Sbjct 24657 TGTTTGGTTGAGGTTGAAAAAGCCGCTAAACCAGTAGCAGCATGTG 24702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192460517930444