Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq239 134 1e-26 >seq239 Length=840022 Score = 134 bits (148), Expect = 1e-26 Identities = 410/639 (64%), Gaps = 2/639 (0%) Strand=Plus/Plus Query 29537 TCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTG 29596 || ||| ||||| || | ||| || ||| ||||| || | | |||| | | | | Sbjct 247645 TCATAGTTCTCCATGGCCAGATCTTCAAACTTGAAGTCTTCAATGTTCTCAATCTTTCGC 247704 Query 29597 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCC 29656 || ||| || |||| || || | || || | || |||||| || ||| | || Sbjct 247705 TTGATCACAAGCTTGGGGAACGGCTTAGGTTCACGTTCAAGCTGAGTCTTCAAAGCGTCG 247764 Query 29657 ACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29716 | |||| | |||||| |||||||| || ||||| || ||||| ||||| | | | Sbjct 247765 ATATGGTTCAAGTAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAA 247824 Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776 ||||| || ||||| ||||| | || | || | || || ||||| || || || Sbjct 247825 CCGGTCACATGAGCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACA 247884 Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACG 29836 || | ||||| || | || || ||||| | ||||| |||||| || | | |||| Sbjct 247885 CCTAATCCCATATCAGCGGATCTTTGGTACAATTGGCAGCTGAGCTCACCATTGGCCACG 247944 Query 29837 TAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTT 29895 ||||| ||| || | || || || || || | ||||| | || ||| | ||||| Sbjct 247945 TAAAATTGAG-CAAGACAATGACAAGGTGGCAAAGCCATTTTGCTCAGGTCAGTCGGGTT 248003 Query 29896 CCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 29955 ||| ||||||| |||||| |||||||| || || |||||| | || ||| | | | | Sbjct 248004 CCAAGCACACATGATGATCCGCCTGTCATCCGGCTTGTTCTTAATTTTGTCAATGACCTC 248063 Query 29956 TTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNC 30015 | ||||||||||| || || ||||| || | | Sbjct 248064 CTTGAGCTGATCCACACCTTGGCCAGAGTAATCAGCATGCATGTCTTGGTATTCCGCACC 248123 Query 30016 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 30075 ||||| | ||| ||||| ||||| || || || || || |||| | || || Sbjct 248124 AAAATGACGCCATTGGAATCCGTAAACAGGACCAAGATCATTGACTTCACGATGAGTCAA 248183 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 || |||||||| ||||||||| || || ||||| ||||| ||| || ||| || Sbjct 248184 TCCTTGCTTGTCCAGAAAGTCTCTTGATCCATTGGCATCCCAAATCCGGACGTTCTTTTC 248243 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30174 || | || ||| || || || || | || |||||| Sbjct 248244 AGACAATTCATTGCCATTGGTTGAACCACGGATGAACCA 248282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406140300772636