Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq230 132 4e-26 >seq230 Length=975444 Score = 132 bits (146), Expect = 4e-26 Identities = 409/628 (65%), Gaps = 10/628 (2%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||||||||| || || || || || || || |||||||| || | ||||| || Sbjct 390366 TTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTTC 390307 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCT--ACAA 4374 ||||| || ||||| ||||| ||||||| || | || | ||||| | || Sbjct 390306 TCCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCA--TCCGAGCTCAAGAA 390249 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 ||||||||||||| ||| | | || ||||| ||| | |||| || || ||||| | Sbjct 390248 GCAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGA 390189 Query 4435 ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 || ||||| || | |||| ||||| ||| ||| |||||||| | | Sbjct 390188 GTCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCAAACGA 390129 Query 4495 TATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAA 4554 | | || | | || || || || || |||| ||| || || |||| Sbjct 390128 TTTGCAAAATCCTCTTTTCGGACAACTTGTTGACCAAGTGCTTGTACATCAAGCATGCAA 390069 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 | || ||||||||||||||||||| |||| |||||| || || |||||||||| Sbjct 390068 AGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTCAATCCGGGCA 390009 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 | || |||| ||| || ||||| || || |||||||| || |||||||| || |||| Sbjct 390008 TCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAAAATTCCTT 389949 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT---CTTTAATCC 4731 | || | || || || || | || | | | || || || | | || |||| Sbjct 389948 CGACTGAAGCGAAAGCGACAATTC--TTTCTGCA-TAGGAAGCGTTATCCGCATTGATCC 389892 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 | || || ||||| || || || |||| |||| || | ||| | || ||||| || | Sbjct 389891 AGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTCAATTGCGTTGAAGA 389832 Query 4792 ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAG 4851 || ||| || |||| || || || || || || || || || |||| Sbjct 389831 GGTTGTGGCGTTCCGCGGGATCTTTGATGTAGGTATCAATGAGGAGACTGTAAGTTTCGC 389772 Query 4852 AATGTATATTTTCTATAGCAATCTGAAA 4879 ||| || ||||| ||||| | |||||| Sbjct 389771 TATGAATGTTTTCCATAGCGACCTGAAA 389744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427025523210458