Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq318 116 5e-21 seq240 114 2e-20 >seq318 Length=230163 Score = 116 bits (128), Expect = 5e-21 Identities = 240/356 (67%), Gaps = 1/356 (0%) Strand=Plus/Minus Query 77197 CCAA-AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGA 77255 |||| |||||||||||| || || || ||||| || |||| ||| | |||||||| Sbjct 43887 CCAAGAATTTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAACAAAAGGGAATTTCTGATG 43828 Query 77256 CCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACA 77315 ||||||| ||| ||| |||| || | | ||||| ||||||| || ||| Sbjct 43827 CCATGTGCCTTGACTTTGGCTTTGAGGTCATCCCAATTGTGTAGATCTGTGGGAGTGACA 43768 Query 77316 TCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAA 77375 | ||| | ||||| || | | ||| ||| | | || | ||| || | ||| Sbjct 43767 TTCCACATGTCGTACTGGAAGAGTCCTTTAGAGACCGGGCAGCCCTCATAAGTCTGATAT 43708 Query 77376 GGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCG 77435 ||||| |||| |||| ||||| || || ||||| ||||| || ||||| || ||| Sbjct 43707 GGTCCCAACTTTTCCGCTATCTCACAGCTGGCCTCCAAAGCTCCATAGTAAATGGTCTCG 43648 Query 77436 AAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATA 77495 || |||| ||| || || || || || || ||||| || || | | | || Sbjct 43647 AAGATCTGCTTGTTAAGGAGCTGGGCCTCTGGGCTTTCAAATGGGTAGCGCATCAAGATG 43588 Query 77496 AAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 77551 ||||| || ||||| ||||| |||||||| ||||| || | || | | ||||||| Sbjct 43587 AAGGCGTCGGCTAAGCCCTGCACTCCAATGCCAATTGGGCGGTGACGCATATTGGA 43532 >seq240 Length=835721 Score = 114 bits (126), Expect = 2e-20 Identities = 177/249 (71%), Gaps = 9/249 (4%) Strand=Plus/Plus Query 171494 CTAGAAGGTTTGGTTTTAAAGGATATTAATGGTATGTACGAGCCCGGAAAACGTAGATGG 171553 || ||||| |||||| | || ||| | || |||| |||||||| || || ||| ||| Sbjct 443485 CTGGAAGGATTGGTTCTTAAAGATCTGAAAAGTATATACGAGCCAGGCAAGCGTCATTGG 443544 Query 171554 CTTAAAATAAAGAGAGACTACTTGAACGAGGGTTCGATGGCGGATTCTGCAGATCTAGTA 171613 | ||| | || | ||| ||||| |||||||| | ||||| ||||| || ||| | || Sbjct 443545 TTGAAAGTCAAAAAAGATTACTTACACGAGGGTGCTATGGCTGATTCGGCTGATTTGGTG 443604 Query 171614 GTATTGGGGGCATATTATGGAAAAGGAACAAAGGGTGGAA---TGATGGCAGTCTTTTTG 171670 || ||||| |||| ||||| ||||| || |||||| | ||| | | |||||| Sbjct 443605 GTCTTGGGCGCATGGTATGGGTCAGGAA---AGCGTGGAAGTATCATGTCTATATTTTTG 443661 Query 171671 ATGGGCTGTTATGACGATGACTCTGGTAAATGGAAAACTGTGACTAAA-TG--TTCTGGA 171727 ||||||||| || | | | ||||||||||| ||||||||| || | | || Sbjct 443662 ATGGGCTGTCTCGATAAGGCCAAGTCGAAATGGAAAACAGTGACTAAAGTGCATACGGGC 443721 Query 171728 CATGATGAT 171736 ||||||||| Sbjct 443722 CATGATGAT 443730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694628630776640