Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq230 161 1e-34 seq240 120 4e-22 seq318 91.5 2e-13 >seq230 Length=975444 Score = 161 bits (178), Expect = 1e-34 Identities = 425/643 (66%), Gaps = 17/643 (3%) Strand=Plus/Minus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||| ||||| |||||||||||||| || |||||||| ||||| || |||||||| || Sbjct 390379 CATGACTCCTGCCTTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATC 390320 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 | || || || ||||| || ||||| ||||| ||| || || | || || |||| Sbjct 390319 AAGAGAAATGTTCTCCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCATCC 390260 Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505 | || || || || || || || | | || ||| ||||| || | ||| Sbjct 390259 GAGCTCAAGAAGCAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATT 390200 Query 46506 CATTCCTATGAGTTTGACC-GGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAG 46564 ||| || |||||| ||| |||| || || || || ||||| ||||||| || | Sbjct 390199 CATGCCAATGAGTC-GACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGG 390141 Query 46565 CATCCGATATTATCGATGTTACTGTTTCCTCACTTGG------TGGATGCATCAAATGTT 46618 | || | | |||| || | ||||| || | | | || | ||| || | Sbjct 390140 CTTCGCAAA----CGAT-TTGCAAAATCCTCTTTTCGGACAACTTGTTG-ACCAAGTGCT 390087 Query 46619 TAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAG 46678 | |||| || |||||||| || ||| | ||||| ||||| || |||||||| Sbjct 390086 TGTACATCAAGCATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGC 390027 Query 46679 AAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATC 46738 || || | || ||||| | ||| ||||| || ||||| || || || || || || Sbjct 390026 TGAAAGTCAATCCGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTC 389967 Query 46739 CAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCAT 46798 | |||||||| || ||||| || | ||||| ||||||| ||| ||| | || || | Sbjct 389966 CGGAAAAGAAAATTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGCGT 389907 Query 46799 CATT---ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTT 46855 || || ||||| | ||||| | ||||| |||| || ||||| ||||| Sbjct 389906 TATCCGCATTGATCCAGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTT 389847 Query 46856 CTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAA 46915 | || || || ||||| || ||| | |||||| | || ||||| || | | Sbjct 389846 CAATTGCGTTGAAGAGGTTGTGGCGTTCCGCGGGATCTTTGATGTAGGTATCAATGAGGA 389787 Query 46916 GACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAA 46958 |||| || |||| |||||||||||| ||||| | |||||| Sbjct 389786 GACTGTAAGTTTCGCTATGAATGTTTTCCATAGCGACCTGAAA 389744 >seq240 Length=835721 Score = 120 bits (132), Expect = 4e-22 Identities = 178/249 (71%), Gaps = 9/249 (4%) Strand=Plus/Plus Query 170062 CTAGAAGGTTTGGTTTTAAAAGATATTAATGGTATATATGAGCCAGGAAAACGTAGATGG 170121 || ||||| |||||| | |||||| | || ||||||| |||||||| || ||| ||| Sbjct 443485 CTGGAAGGATTGGTTCTTAAAGATCTGAAAAGTATATACGAGCCAGGCAAGCGTCATTGG 443544 Query 170122 CTTAAAATAAAGAGAGACTACTTGAATGAGGGTTCGATGGCGGATTCTGCAGATTTAGTA 170181 | ||| | || | ||| ||||| | |||||| | ||||| ||||| || ||||| || Sbjct 443545 TTGAAAGTCAAAAAAGATTACTTACACGAGGGTGCTATGGCTGATTCGGCTGATTTGGTG 443604 Query 170182 GTATTGGGGGCATATTATGGAAAAGGAACAAAGGGTGGAA---TGATGGCAGTATTTTTG 170238 || ||||| |||| ||||| ||||| || |||||| | ||| | |||||||| Sbjct 443605 GTCTTGGGCGCATGGTATGGGTCAGGAA---AGCGTGGAAGTATCATGTCTATATTTTTG 443661 Query 170239 ATGGGTTGCTACGATGACGACTCTGGTAAATGGAAGACTGTAACTAAA-TG--TTCTGGA 170295 ||||| || |||| | | | |||||||| || || |||||| || | | || Sbjct 443662 ATGGGCTGTCTCGATAAGGCCAAGTCGAAATGGAAAACAGTGACTAAAGTGCATACGGGC 443721 Query 170296 CATGATGAT 170304 ||||||||| Sbjct 443722 CATGATGAT 443730 >seq318 Length=230163 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 75366 TCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATAC 75425 |||| || | ||||||||||| | ||||| ||| | || || | | |||||||| | Sbjct 44464 TCTTGTCGACAGTGAACTGAATTGCAGAGGCTGCGGCCTTGGTCCTCAAGTAGTACATTC 44405 Query 75426 CAGTTTTTAGACCCAGACT--CCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 | || || || || |||| ||| |||||||| ||||| | || |||| | || | Sbjct 44404 CCGTCTTGAGGCC--GACTTGCCAGCCGTAGAAGTGCATAGAGGACAGCTTGGCAAAATT 44347 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 || ||||| || || | |||| ||||| || || ||||| || ||||| | ||||| Sbjct 44346 GGGGTCGGCGATGTGCACGTTCAATGACTGGCTCTGGTCGATAAAGGCTCCGCGGTCAGC 44287 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 75589 || ||| || | | ||| ||||| || ||||| | |||||| Sbjct 44286 CGACATCTTGAGGACGGTTTTTTGGCTGATCTCCCAGACGGTTTTG 44241 Score = 86.0 bits (94), Expect = 9e-12 Identities = 134/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 |||||||||||||||| || || |||||| || ||||||||||||||| | || || Sbjct 40539 GCATAGTCAGGATGTTTAGTGGTCATGGTGGCCGCAATTTCTGCCGCTAAATTGTCCAAC 40480 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGA 77518 || | |||||| || || ||| || || ||| || |||| || ||| | | ||| Sbjct 40479 TCCACAGTAGTGACACCCGCATAGAGGCCACTAATGACCTTCAAGGTAATTGAGGTCGGA 40420 Query 77519 TCTACAAACTCGGTGTTCAAACCATAACATAATTT-TCTAATACGAGATGTGATTTTATC 77577 || | | || ||| | |||||| || | ||| |||| | | || ||||||||||| Sbjct 40419 TCGATGTAGTCCATGTCAAGACCATAGCAAAGTTTCTCTA-TCCTCGAAGTGATTTTATC 40361 Query 77578 AAACATGA 77585 || |||| Sbjct 40360 GAA-ATGA 40354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712893174568320