Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq282 107 4e-18 seq275 93.3 1e-13 >seq282 Length=398316 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||| | |||||||| |||||||||||||||||| | || | Sbjct 140558 GAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACG 140617 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || || ||||| | | ||||| || | | || || || Sbjct 140618 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTC 140677 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| ||||| ||||| | || | | |||| || ||| || || || || Sbjct 140678 CTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGT 140737 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||| || ||||| ||||||||||| || |||| |||||||| Sbjct 140738 AATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCATTTT 140779 >seq275 Length=453286 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||||||||| || ||||||||||| || | | ||| | |||||| || | Sbjct 384317 CAAG-TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGCCCATCCTCCA 384375 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || |||||||| | | ||||| || | | || || ||||| ||||| | Sbjct 384376 ATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGA 384435 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | | || || ||| || ||||| || || || || | Sbjct 384436 TCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAGGGTGATCGTCTTAC 384495 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||||| ||||| Sbjct 384496 CAGTCAAAGTCTTAACGAAGATTTGCAT 384523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153752412320046