Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq275 178 3e-39 seq282 176 9e-39 seq243 172 1e-37 seq311 147 5e-30 seq285 118 2e-21 seq361 93.3 9e-14 seq319 93.3 9e-14 seq291 93.3 9e-14 seq267 93.3 9e-14 seq246 93.3 9e-14 seq225 93.3 9e-14 seq306 89.7 1e-12 seq296 89.7 1e-12 seq278 89.7 1e-12 >seq275 Length=453286 Score = 178 bits (196), Expect = 3e-39 Identities = 157/196 (80%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || ||||| |||||||||| || |||||||||||||| | ||| || || ||||| Sbjct 384560 TTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAA 384619 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||||||||| ||||| ||||| |||||||||||||||||||| || || || | Sbjct 384620 GATCAAACGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATT 384679 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| || || |||| || || ||||| ||||| ||||| || || ||||| || || Sbjct 384680 TTCGATGGTATCAGAAGGCTCAACCTCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTAC 384739 Query 283088 GAATATCTGCATTTTC 283103 ||| ||||||||| || Sbjct 384740 GAAGATCTGCATTGTC 384755 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || | |||| || | || || || |||||||||||||| | Sbjct 384297 CCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 384356 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| | ||| || || || |||||||||||||| || || ||| Sbjct 384357 AGAGTACGCCCATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGA 384416 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| || || || | || || || || || | || || Sbjct 384417 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACC 384476 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || |||||||||||||| ||||||||||||||||| || ||||| Sbjct 384477 TCAAGGGTGATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 384523 >seq282 Length=398316 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || |||||||| ||||| | || ||||||||| ||||| ||||| | Sbjct 140322 CCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGAC 140381 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||||||||| || |||||||| |||||||| |||||||||||||| || ||| Sbjct 140382 AATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGGA 140441 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| |||||||||||||| || || ||| | || || ||||| || ||||| || Sbjct 140442 ATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCACC 140501 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || |||||||| || |||| ||||| || || || ||||| Sbjct 140502 TCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| ||| || || || |||||||||||||| || Sbjct 140549 ACCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCT 140608 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || ||||| || || ||||||||||||||||| || || || Sbjct 140609 CAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGG 140668 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||||||||| || || || ||| | ||||| ||||| || || || || Sbjct 140669 AATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAAC 140728 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| || || ||||| || || | |||||| || || || |||||||| Sbjct 140729 CTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCATTTT 140779 >seq243 Length=773012 Score = 172 bits (190), Expect = 1e-37 Identities = 152/190 (80%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 ||||||| |||||||||||| | |||||||||||||| |||||||| ||||| || | Sbjct 552172 CTTTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAA 552113 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 |||| | ||| ||||| ||||| |||||||| || |||||||| || || || | | Sbjct 552112 TCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTT 552053 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||||| || |||| || || ||||| || || ||||||||||||||||| || |||| Sbjct 552052 CGATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGA 551993 Query 283090 ATATCTGCAT 283099 | |||||||| Sbjct 551992 AAATCTGCAT 551983 >seq311 Length=259814 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || |||| || || |||| |||||| ||| ||| || ||||| |||||||| | Sbjct 106092 ACCTCCTCGCAAACGTAGAACCAAATGTAAAGTGGATTCCTTCTGGATATTGTAGTCGGA 106151 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| | ||| || |||||||||||||||||||| || || || Sbjct 106152 GAGAGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGG 106211 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||| ||||||||||||||||| || || || | ||||| || || |||| |||| Sbjct 106212 AATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCGA 106270 >seq285 Length=381527 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 || || | ||| || || ||||||||||||||||| || || ||||| ||||||||| Sbjct 34473 TCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTG 34414 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||||||||| || || || | || || ||||| || | || || ||||| ||||| Sbjct 34413 TCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGTGATG 34354 Query 283065 GTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| | || || ||||| ||||||||||| Sbjct 34353 GTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCATTTT 34316 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||||||||||||||||| | |||| || || ||||| || | ||| || || |||||| Sbjct 34565 CTTTTTGGATGTTGTAGTCGGACAAG-GTACGTCCATCTTCCAATTGCTTGCCAGCAAAG 34507 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCT 283002 ||||||||||| ||||| ||||| ||||||| Sbjct 34506 ATCAAACGTTGCTGGTCTGGAGGAATTCCCTCCT 34473 >seq361 Length=128253 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 113101 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 113043 >seq319 Length=230131 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 3624 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 3566 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 4534 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 4592 >seq291 Length=339505 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 139195 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 139137 >seq267 Length=497725 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 113694 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 113636 >seq246 Length=701585 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 674247 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 674305 >seq225 Length=1235138 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1016313 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 1016255 >seq306 Length=281891 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 53186 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 53130 >seq296 Length=321611 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 126401 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 126457 >seq278 Length=442669 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 430002 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 429946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046677159113404