Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq282 125 5e-24 seq275 125 5e-24 seq285 102 6e-17 seq311 87.8 1e-12 >seq282 Length=398316 Score = 125 bits (138), Expect = 5e-24 Identities = 174/240 (73%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 44100 TTTATTTCAT-TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATG 44158 ||||||| | ||| ||||||| | | || || ||||| || || ||||| ||| Sbjct 140310 TTTATTTAGTGTCCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATG 140369 Query 44159 TTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGC 44218 || || || | | | ||| | || || || || || |||||||| |||||||| || Sbjct 140370 TTATAGTCTGACAATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGT 140429 Query 44219 TGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTC 44277 ||||||| ||| | || || || || ||||| ||||| |||| | || ||||| Sbjct 140430 TGATCTGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTCAC-GTTCTCAATTGTGTC 140488 Query 44278 GGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||| ||||||||||| || || |||||||| || ||||||||||| Sbjct 140489 GGAGGCTTCCACCTCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 Score = 125 bits (138), Expect = 5e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||||||||||||||||| || || | || ||||| ||||| || ||||| Sbjct 140585 CTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAA 140644 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||||||| |||||||||| || | || ||||| || || || ||| | | Sbjct 140645 GATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTT 140704 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||||| || || ||||| | ||||| ||||| || ||||| ||||| || Sbjct 140705 TTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGAC 140764 Query 44326 GAAGATTTGCAT 44337 ||||||||||| Sbjct 140765 AAAGATTTGCAT 140776 >seq275 Length=453286 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 |||||||| |||||| || |||||| ||||||||||| || | ||| ||| | || Sbjct 384311 CAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGCCCATC 384370 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||| ||||| || || ||||||||||| |||||||||| || | || ||||| || Sbjct 384371 CTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTC 384430 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| | || | ||||| |||| | || ||||| | || ||||| Sbjct 384431 TTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAGGGTGATCGT 384490 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| || || | ||||| ||||||||||||||| Sbjct 384491 CTTACCAGTCAAAGTCTTAACGAAGATTTGCATG 384524 Score = 114 bits (126), Expect = 9e-21 Identities = 176/250 (70%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || |||| |||||| |||| |||||| || ||||| ||||| ||||| Sbjct 384518 TTGCATGCCTCCCCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTA 384577 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| ||| | || |||| ||||| || |||||||||||||| ||||| || Sbjct 384578 GTCAGAGAGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTC 384637 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | || ||||| || ||||| ||| | || | ||||| || | | Sbjct 384638 TGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGG 384697 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTG 44343 || ||||| | || || |||||||| || | || || |||||||| ||||| | || Sbjct 384698 CTCAACCTCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCATTGTCTG 384757 Query 44344 -AATGAAAAT 44352 |||| |||| Sbjct 384758 AAATGTAAAT 384767 >seq285 Length=381527 Score = 102 bits (112), Expect = 6e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 ||| || |||| ||||| || |||||||||||||| |||||||||| ||| | || || Sbjct 34477 CTCCTCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTC 34418 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 ||| || ||||| ||| | || | |||||||| | || |||||||| | || Sbjct 34417 CTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGT 34358 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||||||||| || ||||| || ||||| Sbjct 34357 GATGGTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCAT 34319 >seq311 Length=259814 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||| ||||| |||| ||| ||| | || |||| ||||| ||||||||| Sbjct 106129 TCCTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAG 106188 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||||||| |||||||||| || | ||||||||| || Sbjct 106189 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTC 106226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359970103966242