Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq239 129 8e-25 >seq239 Length=840022 Score = 129 bits (142), Expect = 8e-25 Identities = 396/597 (66%), Gaps = 18/597 (3%) Strand=Plus/Minus Query 50301 TTCCCTCTATTTACGACTaaaaaaaTGTTTTGGCGCGGAATAGCGGAAGAACTTTTATGG 50360 ||||| |||| || || ||||||| |||||||| || || || ||||||||||| ||| Sbjct 248339 TTCCCCTTATTGACAACCAAAAAAACCTTTTGGCGAGGCATTGCAGAAGAACTTTTTTGG 248280 Query 50361 TTCCTCGACGGATCTACAAATT-CTTTAAAGTTATCGGAGAAGTCCGTTCGTATATGGGA 50419 ||| || || || || ||| | | || || || || ||| ||| || || ||||| Sbjct 248279 TTCATCCGTGGTTCAACCAATGGCAATGAA-TTGTCTGAAAAGAACGTCCGGATTTGGGA 248221 Query 50420 CGCTCACGGTTCCAGATCAAATTTAGATCGTTTAGGATTTAATTACAG--AAACAAAGGA 50477 || | || || ||| | | || |||||| | | | | || || || Sbjct 248220 TGCCAATGGATCAAGAGACTTTCTGGACAAGCAAGGATTGACTCATCGTGAAGTCAATGA 248161 Query 50478 GATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT-TG 50536 || || ||||||||||| || |||||| | |||||||| ||| ||| | | || Sbjct 248160 TCTT--GGTCCTGTTTACGGATTCCAATGGCGTCATTTTGGTGCGGAATACCAAGACATG 248103 Query 50537 CGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATA-ACGACGTTGA 50595 | | | ||||| || ||||| |||||||| || | | | || || | || | Sbjct 248102 C-ATGCTGATTACTCTGGCCAAGGTGTGGATCAGCTCAAGGAGGTCATTGACAAAATTAA 248044 Query 50596 AAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAGATC 50655 ||||| || || || |||| || | ||| || ||||| || || || | || | Sbjct 248043 GAACAAGCCG-GATGACAGGCGGATCATCATGTGTGCTTGGAACCCGACTGACCT-GAGC 247986 Query 50656 AAACCGT-TTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAATGTTTTA 50714 ||| | ||| || || |||||| | | ||||||||| | | ||||| | Sbjct 247985 AAAATGGCTTTGCCACCTTGTCATTGTCTTGCTCAATTTTACGTGGC---CAATGGTGAG 247929 Query 50715 -TC--CTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTA 50771 || ||| |||| || |||||||| ||||||||||| ||||| || ||||||||| | Sbjct 247928 CTCAGCTGCCAATTGTACCAAAGATCCGCTGATATGGGATTAGGTGTACCTTTCAACATT 247869 Query 50772 GCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAGAA 50831 || ||||| || | || || || |||| ||||| | || | |||| | ||||| Sbjct 247868 GCATCTTATGCCCTTTTGACTCATATGATTGCTCATGTGACCGGTTTGAAGACTGGAGAC 247809 Query 50832 TTTATTCATACGTTAGGAGACGCTCATATTTACCTCGATCACGTCGATGCTTTAAAG 50888 ||| ||||||| | || || |||||| | ||| | | || |||| ||||| ||| Sbjct 247808 TTTGTTCATACCCTCGGCGATGCTCATGTCTACTTGAACCATATCGACGCTTTGAAG 247752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667036626376560