Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq282 156 1e-32 seq285 125 2e-23 seq243 122 2e-22 seq275 114 3e-20 >seq282 Length=398316 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || ||||| ||| | ||||||||| ||| ||| Sbjct 140545 CAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCCGAC 140486 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||| || |||||||| ||||| ||||| || || ||| Sbjct 140485 ACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAACAA 140426 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||||||||| ||||||||||| | || | | || |||||| | Sbjct 140425 CGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCAGACTATAACATT 140366 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || |||||||| Sbjct 140365 CAAAAAGAATCAACTCTTCATCTTGT 140340 Score = 140 bits (154), Expect = 8e-28 Identities = 161/216 (75%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || || || |||||||| || || || || ||||||||||| || Sbjct 140779 AAAATGC---AAATCTTTGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTTGAG 140723 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| ||||||||||| |||||||| || || || ||||| || || || || || Sbjct 140722 GCCTCCGACACCATCGAAAACGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCA 140663 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || |||||||| | ||||| || || || || || ||||||||| | || || |||| Sbjct 140662 GATCAGCAACGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGAGCGAT 140603 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || ||| ||||||| || || ||| ||||| | ||| Sbjct 140602 TACAACATCCAAAAGGAGTCTACATTGCATTTGGTT 140567 >seq285 Length=381527 Score = 125 bits (138), Expect = 2e-23 Identities = 132/172 (77%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 177912 GTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTG 177971 || ||||||| | |||||||| ||||| ||||| || ||||| ||||||||||||||| Sbjct 34313 GTCAAAATGC---AGATTTTCGTCAAAACCCTCACGGGCAAAACCATCACCCTCGAGGTG 34369 Query 177972 GAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 || ||| |||||||| || || ||||| ||||| || ||||| || ||||| ||| Sbjct 34370 GAGCCCTCTGACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCT 34429 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 || || |||||||| | ||||| || || || || | ||||| ||| ||| Sbjct 34430 CCAGATCAGCAACGTTTGATCTTTGCTGGCAAGCAATTGGAAGA-GGAGGGA 34480 >seq243 Length=773012 Score = 122 bits (134), Expect = 2e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | || || || || || ||||||||||| || || || Sbjct 551986 CAGATTTTCGTCAAAACTTTGACGGGTAAGACCATTACCCTCGAGGTAGAGCCTTCCGAT 552045 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| ||||| || || ||||| ||||| ||||||||| Sbjct 552046 ACTATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCAGACCAGCAA 552105 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || |||||||||||||| ||||| ||||| | ||| | || || ||| | Sbjct 552106 AGGTTGATTTTCGCCGGAAAACAACTCGAGGATGGCCGCACTTTGAGTGACTACAACATT 552165 Query 178104 CAAAAAG 178110 ||||||| Sbjct 552166 CAAAAAG 552172 >seq275 Length=453286 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||| | || ||||| || |||||||||||||| || || || Sbjct 384748 CAGATCTTCGTAAAAACTTTAACTGGAAAGACCATCACCCTCGAGGTTGAGCCTTCTGAT 384689 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| || || || || || ||||||||| Sbjct 384688 ACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAGCAA 384629 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || | || ||||| | || || | || || || || Sbjct 384628 CGTTTGATCTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCCTCTCTGACTACAATATC 384569 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || ||||| || || || | || |||||| Sbjct 384568 CAGAAGGAATCTACCCTTCACTTGGTCTTGAGA 384536 Score = 105 bits (116), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || || ||||||||||| ||||| || || || Sbjct 384520 CAAATCTTCGTTAAGACTTTGACTGGTAAGACGATCACCCTTGAGGTTGAGCCGTCCGAT 384461 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || ||||| || || || || || || |||||| Sbjct 384460 ACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAGCAA 384401 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || | || ||||| | ||||| | || || ||| || Sbjct 384400 CGTTTGATCTTCGCTGGCAAGCAATTGGAGGATGGGCGTACTCTCTCAGACTACAACATC 384341 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 384340 CAGAAGGAGTCTACTCTTCA-CTTG 384317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203659854099444