Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq282 84.2 2e-11 >seq282 Length=398316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || || || |||||||||||||| || | ||||| | || ||| Sbjct 140340 ACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGGCCATCTTCG 140399 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || || || ||||| || |||| || ||||| || | |||| | ||| ||||| | Sbjct 140400 AGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGG 140459 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | |||||| | |||||||||| || ||||| || Sbjct 140460 ATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCACCTCCAAGGTAATCGTCTTG 140519 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || || ||||| Sbjct 140520 CCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462277267271200