Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4446 111 2e-19 seq295 100 3e-16 seq11114 86.0 7e-12 >seq4446 Length=45416 Score = 111 bits (122), Expect = 2e-19 Identities = 93/113 (82%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 24615 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 24674 ||| |||| |||| ||| |||||||| ||||||||||||| || || || ||||| ||| Sbjct 5410 ATACCTTT-GATAAATCAACTTCTTCTGCTGTCCAAAATGAAGCTTCGGCTTTTTTGTAC 5352 Query 24675 ATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 || ||||| || |||||||||| ||| ||||| ||||||||||| |||| || Sbjct 5351 ATCTTCCAAATATCATGATATTCAATGGGAAATATAACAAATCTTCTTGGGTT 5299 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 23785 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC--TTGA-GACATAACTCCCA 23841 || ||||||| ||| |||| |||| |||| | | ||| | |||| ||||| || || Sbjct 20947 TTATTTAAAAATCAGCATCCAAAGTAAAAACACTTTCTGCCTTTGATGACATCACGCCAG 20888 Query 23842 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 23901 ||| |||||||||||||| ||| || || ||||||||||| ||||| | ||| |||| Sbjct 20887 CTTTCTGGTATTCACCCACTTTTTTCTCAAAGAAATTAGTTTTGCCTTCAAGTGAAATAT 20828 Query 23902 TTTCCATGAAATCGGATGGATTGGTAACATTATA 23935 |||||||| || |||| || || |||| || Sbjct 20827 GCTCCATGAAGTCAAATGGGTTTGTTGCATTGTA 20794 >seq295 Length=498498 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 53749 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 ||||| || ||| ||||||||||||||||||||||| || ||||||| ||||| ||| || Sbjct 334499 ATATTCTACTATTTCAGTGCAAAGATTACTACACTTAATAGTTCCTAGATTTTTTTGGTT 334558 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 || | ||||||||||| || || | ||| | || ||| ||||||| || | Sbjct 334559 TGATTTCCTATTACACGCATCTTTGTATAACATGTAAGGGACACCTGTTTCAACTTGAGC 334618 Query 53869 TTCTATAATCGCTTTCCA 53886 ||||| || |||||||| Sbjct 334619 CTCTATTATGGCTTTCCA 334636 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || |||||||| ||||| | || | || || || ||||| || || ||||| | | Sbjct 324043 ACCTGAAATTCCCCAGAGAGAACACGCCTAGAATATATATTTGATGTGTATGGTTCGAAA 324102 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||| ||||| | ||||| ||||||||||| || ||||| || || | ||||| | Sbjct 324103 GACTCATTGTTTCCAAGTATTTGGGCAGTTGATGCTGTAGGCATTGGAGCAATCAATAGA 324162 Query 53270 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAG 53309 ||| | ||||| | | ||||| ||||| |||| Sbjct 324163 GAGTTTTTTAGACCATTAGCCAATATTTTTTCTTTCAGAG 324202 >seq11114 Length=6469 Score = 86.0 bits (94), Expect = 7e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | |||||| ||||||||||||| |||||| || || ||||| || || || | Sbjct 821 CACTGAAAACTTTTTTAGTTTCTTTGTGTAAATTTGAAACAGCAATTCTGGCAGCGAGCA 880 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 |||||||| ||||| | ||||| || || || |||| || | | | | || | Sbjct 881 ATGCATAATCTGGATGCTTAGTAGTCATTGTAGCAGCAGTTTCTGCGGCTAAATTATCTA 940 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAA 54944 |||| || || | ||||||| ||| | || ||||| ||||| | |||| || Sbjct 941 ATTCAACTGTGGATACTCCAGGATAAAGCCCAGATATAACTTTCATTGTAATTTCAA 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593593786582560