Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq684 91.5 1e-13 >seq684 Length=498857 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||||| || |||||||||||| | || |||||| || || || |||||||| Sbjct 348817 AAGCAAAAA-TTCAGGATAAAGAAGGTATTCCTCCAGATCAGCAGAGGCTAATCTTTGCA 348875 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 || |||||| | |||||| | ||| || | || || |||||||| || ||||| ||| Sbjct 348876 GGTAAACAATTAGAAGATGGCCGAACCTTGTCTGACTATAATATTCAAAAAGAATCCACT 348935 Query 29160 CTTCACATGGTGTTACG 29176 |||||| | || || || Sbjct 348936 CTTCACTTAGTTTTGCG 348952 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || || | |||||||| || ||||| ||||| ||| ||| ||| || Sbjct 348278 AAAAATGCAGATCTTTGTGAAAACATTAACTGGCAAGACCATCACCTTGGAAGTGGAGCC 348337 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || || | | || ||||| || || || |||||||| | || ||| Sbjct 348338 CTCTGATACCATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGAATCCCTCCAGA 348397 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 |||||||| | || ||||| || || || || |||||| | ||| || | || || Sbjct 348398 CCAACAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACGTTGTCTGACTA 348457 Query 29138 CAATATTCAGAAGGAATCTACTCTTCA 29164 ||||| || || |||||||||||||| Sbjct 348458 TAATATCCAAAAAGAATCTACTCTTCA 348484 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| | || ||||||||||| || ||| ||||||| | Sbjct 349650 ATGCAGATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTAGAAGTGGAACCCTCT 349709 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| ||||| ||||| ||||| | ||| ||| ||| Sbjct 349710 GATACCATCGAGAATGTTAAAGCTAAAATACAAGATAAGGAAGGAATTCCCCCAGACCAA 349769 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || ||| |||||||| | ||| | | || |||||| Sbjct 349770 CAGAGGTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGTACTCTTTCTGACTACAAT 349829 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || ||||| ||||||||||| ||| Sbjct 349830 ATCCAGAAAGAATCTACTCTCCAC 349853 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || ||||| ||||| ||| ||| || || | Sbjct 349878 ATGCAGATCTTCGTTAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTTGAGCCATCT 349937 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| |||||| |||||||||||| | ||| ||| ||| Sbjct 349938 GATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAAGGTATCCCCCCAGACCAA 349997 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || ||| |||||||| ||| | | || |||||| Sbjct 349998 CAGAGGTTGATCTTTGCTGGTAAGCAATTGGAAGATGGACGTACTCTTTCAGACTACAAT 350057 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || ||||| ||||||||||| ||| Sbjct 350058 ATCCAGAAAGAATCTACTCTCCAC 350081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428246095218410