Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq684 122 7e-23 seq6499 104 2e-17 >seq684 Length=498857 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||||| ||| || || || | ||| | ||| || || ||||| || |||||||| | | Sbjct 348508 CCCCCTCTCAGTCTAAGGACAAGATGAAGAGTAGATTCTTTTTGGATATTATAGTCAGAC 348449 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | || || ||||| || || ||| |||| | || || ||||| || Sbjct 348448 AACGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGG 348389 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| |||||| || || | | | |||||| ||||||| | Sbjct 348388 ATTCCTTCTTTGTCCTGGATCTTAGCCTTAACATTCTCAATGGTATCAGAGGGCTCCACT 348329 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| ||| ||||||||||| ||||| ||||| ||||| || |||||||| Sbjct 348328 TCCAAGGTGATGGTCTTGCCAGTTAATGTTTTCACAAAGATCTGCATTTT 348279 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| | ||| || || | ||||| ||| || ||||||||||| |||||||| | Sbjct 349420 CCTCCTCTTAACCTAAGGACAAGATGCAGAGTAGATTCCTTTTGAATATTATAGTCAGAT 349361 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||||| ||| ||||| ||| |||| | || ||||| || ||| Sbjct 349360 AATGTACGACCATCCTCCAACTGCTTGCCAGCAAAAATTAATCGTTGCTGATCAGGGGGA 349301 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||| || || || | | | ||| ||| ||| ||| Sbjct 349300 ATCCCTTCCTTGTCTTGGATTTTAGCCTTAACATTTTCAATAGTGTCAGAGGGTTCCACC 349241 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||||| |||||||| || | || || ||||| ||||||||| Sbjct 349240 TCAAGAGTAATAGTCTTGCCAGTAAGAGTCTTAACAAAAATTTGCATT 349193 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | ||| ||||| ||||||||||||||||| | || || || | || Sbjct 350317 AGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAGTCAGAGAGCGTACGGCCATCT 350258 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || ||| | || | |||||||| || || | ||||| ||||| Sbjct 350257 TCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGAATTCCTTCTTTGTCT 350198 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||| || | ||| || ||| ||||| ||||| ||| |||||| Sbjct 350197 TGAATCTTGGCTTTTACATTTTCGATGGTGTCAGATGGCTCAACTTCCAAGGTGATGGTC 350138 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 350137 TTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 350106 >seq6499 Length=11414 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| ||||| | || ||| | ||||| |||||||| || Sbjct 19 GTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCATCCTCAAGCTGTTTACCT 78 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| | |||||||| || || | ||||| ||||| |||||| ||| Sbjct 79 GCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTC 138 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||| ||| ||||| ||||| |||||| |||||||| || | ||| Sbjct 139 ACATTCTCAATAGTGTCAGAAGGCTCTACTTCCAAGGTAATAGTCTTGCCAGTAAGTGTT 198 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 199 TTTACAAAGATCTGCAT 215 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || ||| || || | || | ||| || || || |||||||||||||| | Sbjct 673 CCACCTCTCAACCTAAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAGAG 732 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| || | ||| || || ||| | || || |||||||| || || Sbjct 733 AGAGTACGGCCGTCTTCTAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 792 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| || || |||||| |||||| | | | |||||| ||||| | Sbjct 793 ATACCTTCTTTATCCTGAATCTTTGCTTTCACATTTTCAATCGTATCAGATGGCTCGACT 852 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| || || | ||||||||||| || ||||| Sbjct 853 TCTAAGGTGATGGTCTTTCCTGTGAGAGTTTTGACAAAGATCTGCAT 899 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | || ||||||||||||||||| || || | || ||| | || Sbjct 460 AGGACCAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAGAGAGTTCTTCCATCT 519 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || || | || | |||||||| || || | ||||| ||||| Sbjct 520 TCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGTGGAATTCCTTCTTTGTCT 579 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | |||||| ||||| ||||| ||| || ||| Sbjct 580 TGGATCTTGGCCTTCACATTCTCAATAGTATCTGATGGCTCTACTTCCAGGGTGATAGTC 639 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||||| ||||| |||||||| Sbjct 640 TTGCCAGTAAGTGTTTTTACAAAGATTTGCAT 671 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20961 CTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCG 21020 || || || | ||| | || |||||||||||||| || ||||| | || || | | Sbjct 229 CTAAGGACAAGATGGAGGGTTGACTCCTTTTGAATATTGTAGTCTGAGAGTGTACGTCCA 288 Query 21021 TCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTG 21080 || || ||||| || || || | || | |||||||| || || | |||||||| Sbjct 289 TCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTA 348 Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140 || ||||| ||| || | ||| || ||| |||||| ||||| ||| ||| Sbjct 349 TCCTGTATCTTAGCTTTTACATTTTCGATTGTGTCAGACGGCTCCACTTCCAGGGTTATG 408 Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || | ||||| ||||| |||||||| Sbjct 409 GTCTTACCAGTGAGTGTTTTAACAAAGATTTGCAT 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422170570696952