Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq684 100 2e-16 >seq684 Length=498857 Score = 100 bits (110), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 ||||||||| || |||||||||||| | || |||||| || || || |||||||| Sbjct 348817 AAGCAAAAA-TTCAGGATAAAGAAGGTATTCCTCCAGATCAGCAGAGGCTAATCTTTGCA 348875 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 || |||||||| |||||| | ||| || | || || ||||||||||| ||||| ||| Sbjct 348876 GGTAAACAATTAGAAGATGGCCGAACCTTGTCTGACTATAATATTCAAAAAGAATCCACT 348935 Query 25233 CTTCACATGGTGTTACG 25249 |||||| | || || || Sbjct 348936 CTTCACTTAGTTTTGCG 348952 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||||||||| || || | |||||||| || ||||| ||||| ||| ||| ||| || Sbjct 348278 AAAAATGCAGATCTTTGTGAAAACATTAACTGGCAAGACCATCACCTTGGAAGTGGAGCC 348337 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | | || || | | || | ||| || || || |||||||| | || ||| Sbjct 348338 CTCTGATACCATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGAATCCCTCCAGA 348397 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 |||||||| | || ||||| || || || | |||||| | ||| || | || || Sbjct 348398 CCAACAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACGTTGTCTGACTA 348457 Query 25211 CAATATTCAAAAGGAATCTACTCTTCA 25237 ||||| ||||| |||||||||||||| Sbjct 348458 TAATATCCAAAAAGAATCTACTCTTCA 348484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | ||||| | || ||||||||||| || ||| ||||||| | Sbjct 349650 ATGCAGATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTAGAAGTGGAACCCTCT 349709 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||||| ||||| ||||| | ||| ||| ||| Sbjct 349710 GATACCATCGAGAATGTTAAAGCTAAAATACAAGATAAGGAAGGAATTCCCCCAGACCAA 349769 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || |||||||||||| | ||| | | || |||||| Sbjct 349770 CAGAGGTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGTACTCTTTCTGACTACAAT 349829 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 || || || ||||||||||| ||| Sbjct 349830 ATCCAGAAAGAATCTACTCTCCAC 349853 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || | || ||||| ||||| ||| ||| || || | Sbjct 349878 ATGCAGATCTTCGTTAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTTGAGCCATCT 349937 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| |||||||||||| | ||| ||| ||| Sbjct 349938 GATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAAGGTATCCCCCCAGACCAA 349997 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || |||||||||||| ||| | | || |||||| Sbjct 349998 CAGAGGTTGATCTTTGCTGGTAAGCAATTGGAAGATGGACGTACTCTTTCAGACTACAAT 350057 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 || || || ||||||||||| ||| Sbjct 350058 ATCCAGAAAGAATCTACTCTCCAC 350081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410710576575908