Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq684 109 5e-19 seq6499 86.0 5e-12 >seq684 Length=498857 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | || || || || |||| || ||||||||||||||||| || || Sbjct 350333 ACCTCCACGAAGTCGCAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAGTCAGA 350274 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | || || ||| || ||||| || ||||| |||| | | ||||||||| || || Sbjct 350273 GAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGG 350214 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || || |||||| ||| || ||| || | ||||| |||||| | ||| || Sbjct 350213 AATTCCTTCTTTGTCTTGAATCTTGGCTTTTACATTTTCGATGGTGTCAGATGGCTCAAC 350154 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || ||||| || ||||| || ||||| |||||||| Sbjct 350153 TTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 350106 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || ||||| | || || ||||||||||| || || || || || || ||| Sbjct 348950 CAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAGACAAGGTTCGGCCATC 348891 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||||| || || |||| || | ||||||||| ||||| || || || || || Sbjct 348890 TTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAGGAATACCTTCTTTATC 348831 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||||||| ||| || | ||| | || || | ||| || || | ||| | || Sbjct 348830 CTGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTGATGGT 348771 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || |||||||| |||||||||||||| Sbjct 348770 CTTTCCTGTTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| |||||||||||||| | ||| | ||| || |||||||||||| Sbjct 349162 GTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGCTGTTTTCCA 349103 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | | ||| ||||| || || || || || |||||| || || || Sbjct 349102 GCAAATATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTG 349043 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | ||||| | || | || || || | || | |||||||| || ||||| Sbjct 349042 ACATTTTCAATAGTGTCAGATGGT-TCAACTTCTAATGTAATAGTTTTGCCAGTAAGAGT 348984 Query 118721 TTTTACAAAAATCTGCAT 118738 ||| |||||||||||||| Sbjct 348983 TTTCACAAAAATCTGCAT 348966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||||| ||||| || || ||||| || | ||| || ||| || | || Sbjct 349853 GTGGAGAGTAGATTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCTTCCAATTG 349794 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| | | ||| || || || || || || ||||| ||| ||||| Sbjct 349793 CTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGAATTCCTTCCTTATCTTGTATTTT 349734 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 |||||| | |||| ||| || | | || || || | || | |||||||| || Sbjct 349733 AGCTTTAACATTCTCGATGGTATCAGAGGGTTCCACTTCTAAAGTGATGGTTTTGCCAGT 349674 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| |||||||||||||| Sbjct 349673 AAGAGTTTTCACAAAAATCTGCAT 349650 >seq6499 Length=11414 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||||||||||| || || || || || | ||| || ||| || | ||| Sbjct 925 TGGAGAGTAGACTCTTTCTGGATATTATAGTCTGAAAGAGTACGACCATCTTCCAATTGT 984 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTT 118654 || |||||| |||| | | ||| ||||| ||||| || |||||||| | |||| || || Sbjct 985 TTACCAGCGAAGATCAATCTCTGTTGATCTGGAGGGATTCCCTCCTTATCCTGT-ATCTT 1043 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 |||||| | ||| | ||| || | | || || || | || | ||||| || || Sbjct 1044 AGCTTTAACATTTTCAATGGTATCAGAGGGTTCCACTTCTAAAGTGATGGTTTTACCTGT 1103 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || |||||||||||||| Sbjct 1104 GAGTGTCTTCACAAAAATCTGCAT 1127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| ||||| ||||| |||||||| || | ||| | |||||| | Sbjct 8 CAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCATCCTCAA 67 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||||| || || | || | | ||||||||| || || || || || |||||| | Sbjct 68 GCTGTTTACCTGCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGGA 127 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | ||||| | ||| || || | ||| | || |||| Sbjct 128 TCTTGGCCTTCACATTCTCAATAGTGTCAGAAGGCTCTACTTCCAAGGTAATAGTCTTGC 187 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || ||||||||||| |||||||| Sbjct 188 CAGTAAGTGTTTTTACAAAGATCTGCAT 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433739341981624