Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq980 84.2 4e-11 seq806 84.2 4e-11 >seq980 Length=337795 Score = 84.2 bits (92), Expect = 4e-11 Identities = 172/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 51937 GATACGGTATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATAT 51996 |||||| | || |||||||| ||||||||| || || | | || || || || ||| Sbjct 175687 GATACGTTCTTCTTCATACTCAGGAAAAAAGAAAAACAATTAACCTTCCTTCATGTGTAT 175746 Query 51997 CATCATTTTACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGG-TCA 52055 || || | |||||||| | || | ||||| || ||||||||| || | | || ||| Sbjct 175747 CACCACTCAACTATGTTCTCCCTGTGGTGGATTGGAATTAAATGGGTTCCCAGTGGATCA 175806 Query 52056 GGCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGG 52115 | || || ||| | | ||||| |||||||||||| | ||||| | |||||||| Sbjct 175807 ACC-TTCTTACCAGCCATGGTCAATTCATTTATCCATGTTCTCATGTATTCATATTATGG 175865 Query 52116 TATGGCCGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 || | || ||||| | | || ||||| ||||||||| ||||| || || Sbjct 175866 ATTGTCAGCACTGGGTCCAAATATAGCCAAATATCTTTGGTGGAAAAAATATCTCACAAT 175925 Query 52176 AATGCAGTTGGTA 52188 | || ||||| Sbjct 175926 GCTACAACTGGTA 175938 >seq806 Length=346368 Score = 84.2 bits (92), Expect = 4e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 135727 GGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTC 135786 ||||| || ||||||||| || | ||| || ||||| |||||| || ||||| || Sbjct 12854 GGTATTTGTGATAATTTAGTGCTTTGTATAGTGAGAGCTTGGGATGTAAGAAAACCTCTA 12913 Query 135787 ATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAACATAT 135845 || || ||||| |||||||||||| ||||||| || || ||||| | |||||||| Sbjct 12914 ATATTTTGTCCAGCAATGAATACTAAGATGTGGGCCCACCCGATTACTGCTAAACATAT 12972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922998058808880