Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq684 107 3e-18 seq6499 104 3e-17 seq75 102 1e-16 seq1688 98.7 1e-15 seq236 86.0 9e-12 >seq684 Length=498857 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| |||| | || | ||| | |||||| ||||| |||||||| |||||| Sbjct 348736 CCACCTCTGAGTCGAAGGACAAGATGGAGAGTAGACTCTTTCTGGATATTATAGTCTGAA 348677 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || ||||| || |||||||| ||||| || || || || || || Sbjct 348676 AGAGTACGGCCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGG 348617 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||||||||| || Sbjct 348616 ATTCCTTCTTTATCCTG 348600 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| ||||| | || | ||| | |||||||||||| |||||||| || || Sbjct 348508 CCCCCTCTCAGTCTAAGGACAAGATGAAGAGTAGATTCTTTTTGGATATTATAGTCAGAC 348449 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||| || ||| || | || ||||||||||||||||| ||||| || || ||||| Sbjct 348448 AACGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGG 348389 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 348388 ATTCCTTCTTTGTCCTG 348372 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | || || || || | ||| |||||||| |||||||| || | Sbjct 348966 TTCCACCACGAAGGCGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAG 348907 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | |||| || ||| ||||||||||| || ||||| || | || |||||||| |||| Sbjct 348906 ACAAGGTTCGGCCATCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAG 348847 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||||||||| || Sbjct 348846 GAATACCTTCTTTATCCTG 348828 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || || | || | || | |||||||||||| ||||| || || ||| Sbjct 349876 CCGCCTCTGAGCCTAAGAACAAGGTGGAGAGTAGATTCTTTCTGGATATTGTAGTCAGAA 349817 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || ||||| || |||||||| ||||| || || || || || ||| Sbjct 349816 AGAGTACGGCCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGA 349757 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 349756 ATTCCTTCCTTATCTTG 349740 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 ||| | ||| |||||||| || || ||||| || |||||||| | ||| || | || Sbjct 349169 ATGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGCTG 349110 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||| ||||| || || ||||| || || ||||||||||| ||||| Sbjct 349109 TTTTCCAGCAAATATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTG 349056 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || || | || | || | |||||||||||| ||||| || |||||| Sbjct 350104 CCGCCTCTGAGCCTAAGAACAAGGTGGAGAGTAGATTCTTTCTGGATATTGTAGTCTGAA 350045 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || ||||| || |||||||| ||||| || || || || || || Sbjct 350044 AGAGTACGTCCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGG 349985 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 349984 ATACCTTCTTTATCCTG 349968 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | || ||||| | ||| || ||||| || ||||| || || Sbjct 350332 CCTCCACGAAGTCGCAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAGTCAGAG 350273 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || | || || |||||||| ||||| || |||||||| || ||| Sbjct 350272 AGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGA 350213 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| Sbjct 350212 ATTCCTTCTTTGTCTTG 350196 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || ||||| | || | || | ||| | ||||||||| ||| || |||||||| || || Sbjct 349420 CCTCCTCTTAACCTAAGGACAAGATGCAGAGTAGATTCCTTTTGA-ATATTATAGTCAGA 349362 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| || || || || ||||||||||| |||| ||||||||| || || Sbjct 349361 TAATGTACGACCATCCTCCAACTGCTTGCCAGCAAAAATTAATCGTTGCTGATCAGGGGG 349302 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || ||||| Sbjct 349301 AATCCCTTCCTTGTCTTG 349284 >seq6499 Length=11414 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | || | ||| | |||||| ||||| |||||||| |||||| Sbjct 901 CCACCTCTGAGGCGAAGGACTAGATGGAGAGTAGACTCTTTCTGGATATTATAGTCTGAA 960 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || |||||||| ||||| || |||||||| || ||||| ||||| Sbjct 961 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGAGGG 1020 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || ||||| || Sbjct 1021 ATTCCCTCCTTATCCTG 1037 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | || | || | ||| |||||||| || ||||| || || Sbjct 673 CCACCTCTCAACCTAAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAGAG 732 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || || ||||| || ||||||||||| |||| || |||||||| |||||| Sbjct 733 AGAGTACGGCCGTCTTCTAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 792 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 793 ATACCTTCTTTATCCTG 809 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 146095 TATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCT 146154 ||| || || ||||| |||||||| | ||| || | ||||| || ||||||||||| || Sbjct 33 TATGTTGTAGTCTGAGAGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAAATCAACCT 92 Query 146155 TTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || || ||||||||||| ||||| Sbjct 93 CTGCTGATCTGGTGGGATTCCTTCTTTGTCTTG 125 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/228 (67%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || ||||| | || | |||| ||| | || || || ||| || || || ||||| || Sbjct 445 CCTCCTCTCAATCGAAGGACCAGATGAAGCGTTGACTCCTTTTGA-ATGTTGTAATCAGA 503 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||||| | ||| || | || || ||||| || ||||| || |||||||| || || Sbjct 504 GAGAGTTCTTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGTGG 563 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 |||||||||||| ||||| ||||||||| ||||| Sbjct 564 AATTCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATAGTATCTGATGGCTCTAC 623 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| || ||||| || || || || | |||||| | || |||||||| Sbjct 624 TTCCAGGGTGATAGTCTTGCCAGTAAGTGTTTTTACAAAGATTTGCAT 671 >seq75 Length=1070293 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| ||| || | || | |||||| ||||||||||| || || || || || Sbjct 570548 CCACCTCGAAGCCTAAGCACAAGATGTAAGGTAGATTCTTTCTGAATGTTGTAGTCAGAC 570607 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || || ||||| ||||||||||||||||| |||||||| ||||| Sbjct 570608 AAGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGG 570667 Query 146171 ATTCCT 146176 |||||| Sbjct 570668 ATTCCT 570673 >seq1688 Length=171348 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 |||||||| || || |||||||| | ||| || |||||||| ||||||||||| || || Sbjct 124672 ATATTATAGTCAGATAGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAAATTAACCTC 124613 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || |||||||||||||| ||||| || Sbjct 124612 TGCTGGTCAGGAGGAATTCCTTCCTTATCCTG 124581 >seq236 Length=780800 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 ||||||||| || || ||||| ||||||||||| || || | ||||||||||| Sbjct 69048 AGCTGGAGTTATCGATATGGATTACAGAGGAAATGTTGGTGTGGTCATATTTAATCATGG 69107 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 | || || ||| | || ||| |||||| ||||| |||||||||||||||| ||||| Sbjct 69108 TGATTGTGACTTTGTCATTAATGAAGGAGACCGAATAGCTCAATTAATATGTGAGAAAAT 69167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743366337354240