Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq684 120 2e-22 seq6499 111 1e-19 >seq684 Length=498857 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||||| || || ||||| | |||| ||||||||| || |||||||| || Sbjct 349876 CCGCCTCTGAGCCTAAGAACAAGGTGGAGAGTAGATTCTTTCTGGATATTGTAGTCAGAA 349817 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || ||||| ||||| || || || || | || ||| ||||| ||| Sbjct 349816 AGAGTACGGCCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGA 349757 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||| ||| |||||| || | || | ||| | | ||| || Sbjct 349756 ATTCCTTCCTTATCTTGTAT-TTTAGCTTTAACATTCTCGATGGTATCAGAGGGTTCCAC 349698 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||||| || |||||||||||||| |||||||| Sbjct 349697 TTCTAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCAT 349650 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||||| || || ||||| | |||| ||||||||| || |||||||| || Sbjct 350104 CCGCCTCTGAGCCTAAGAACAAGGTGGAGAGTAGATTCTTTCTGGATATTGTAGTCTGAA 350045 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || ||||| ||||| || || || || | || ||| ||||| ||| Sbjct 350044 AGAGTACGTCCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGG 349985 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | || || || || || ||| | || | || | ||| | | || || Sbjct 349984 ATACCTTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGATGGCTCAACT 349925 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || ||||| || || ||||||||||| Sbjct 349924 TCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAACGAAGATCTGCAT 349878 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || || | |||| |||||||| || || ||||| || || |||| | || Sbjct 348721 AGGACAAGATGGAGAGTAGACTCTTTCTGGATATTATAGTCTGAAAGAGTACGGCCATCT 348662 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||| ||||| || || || || | || ||| ||||| ||| | | || || || Sbjct 348661 TCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATTCCTTCTTTATCC 348602 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || || ||| | || | || | ||| | || || || |||| |||||||| Sbjct 348601 TGAATTTTCGCCTTAACATTTTCAATTGTATCAGACGGCTCAACTTCCAAGGTGATGGTC 348542 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| |||||||| || |||||||||||||| Sbjct 348541 TTGCCTGTGAGAGTCTTTACAAAGATCTGCAT 348510 >seq6499 Length=11414 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || ||| || || ||||| | ||| ||||||||| ||||| ||||| || Sbjct 673 CCACCTCTCAACCTAAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAGAG 732 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || |||||||| || || || || |||| |||||| || || Sbjct 733 AGAGTACGGCCGTCTTCTAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 792 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || || || |||||| ||||| | || | |||| ||| | | ||||| Sbjct 793 ATACCTTCTTTATCCTGAATCTTT-GCTTTCACATTTTCAATCGTATCAGATGGCTCGAC 851 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || ||||||||||| |||||||||||||| Sbjct 852 TTCTAAGGTGATGGTCTTTCCTGTGAGAGTTTTGACAAAGATCTGCAT 899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323004189408320