Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq684 111 1e-19 seq6499 89.7 4e-13 >seq684 Length=498857 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || |||||||||||||| || ||||| | || ||| | |||||| ||||| Sbjct 348941 GTGAAGAGTGGATTCTTTTTGAATATTATAGTCAGACAAGGTTCGGCCATCTTCTAATTG 348882 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| |||| || || || ||||| || | ||||| ||||| ||||| Sbjct 348881 TTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAGGAATACCTTCTTTATCCTGAATTT- 348823 Query 18242 TTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 |||| || || | | ||| ||| ||| ||||| ||| | ||||||| | || || | Sbjct 348822 TTGCTTTCACATTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTGATGGTCTTTCCTG 348763 Query 18301 TCAATGTTTTTACAAAAATTTGCAT 18325 | | ||||| |||||||| ||||| Sbjct 348762 TTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || ||||| || | || || || ||||| |||||||| || ||||| | Sbjct 349420 CCTCCTCTTAACCTAAGGACAAGATGCAGAGTAGATTCCTTTTGAATATTATAGTCAGAT 349361 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||| ||||| || ||||| ||| | || | || ||| ||||| ||| Sbjct 349360 AATGTACGACCATCCTCCAACTGCTTGCCAGCAAAAATTAATCGTTGCTGATCAGGGGGA 349301 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || |||| ||| || | | ||| ||||||| ||| || Sbjct 349300 ATCCCTTCCTTGTCTTGGATTTTAGCCTTAACATTTTCAATAGTGTCAGAGGGTTCCACC 349241 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| || || | ||||| || | || || ||||||||||||||| Sbjct 349240 TCAAGAGTAATAGTCTTGCCAGTAAGAGTCTTAACAAAAATTTGCATT 349193 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||||||| || | ||||| || ||||||||||| || || ||||| | || ||| Sbjct 348499 AGTCTAAGGACAAGATGAAGAGTAGATTCTTTTTGGATATTATAGTCAGACAACGTTCGG 348440 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | || || || ||| | || | |||||||| || || | ||||| Sbjct 348439 CCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGGATTCCTTCT 348380 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || || | ||| || | ||| || ||| |||||| ||| | |||| Sbjct 348379 TTGTCCTGGATCTTAGCCTTAACATTCTCAATGGTATCAGAGGGCTCCACTTCCAAGGTG 348320 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||| | ||||| || |||||||| ||||| || ||||||||| Sbjct 348319 ATGGTCTTGCCAGTTAATGTTTTCACAAAGATCTGCATTTTT 348278 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||| || | ||||| || |||||||| ||||||||||| || | Sbjct 349193 TCCTCCACGGAGCCGAAGAACAAGATGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGA 349134 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||| | ||||| || ||| | || | || |||||||| || Sbjct 349133 GAGAGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAATATCAACCTCTGTTGATCTGGTGG 349074 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || || | |||||| | | ||| ||||||| || || Sbjct 349073 GATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATAGTGTCAGATGGTTCAAC 349014 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || || ||||||| || | ||||| |||||||| |||||| Sbjct 349013 TTCTAATGTAATAGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCATT 348965 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 || ||||| || | ||| || || |||||||| || || |||||||| | | || Sbjct 349867 AGCCTAAGAACAAGGTGGAGAGTAGATTCTTTCTGGATATTGTAGTCAGAAAGAGTACGG 349808 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||||||| || || ||| |||| | || ||||| || ||| | |||||| Sbjct 349807 CCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGAATTCCTTCC 349748 Query 18228 TTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| |||| | || || || | | | || ||| ||| || ||| | || Sbjct 349747 TTATCTTGTATTT-TAGCTTTAACATTCTCGATGGTATCAGAGGGTTCCACTTCTAAAGT 349689 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| || | ||||| |||||||| ||||| Sbjct 349688 GATGGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCAT 349650 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 || ||||| || | ||| || || |||||||| || || |||||||| | | || Sbjct 350095 AGCCTAAGAACAAGGTGGAGAGTAGATTCTTTCTGGATATTGTAGTCTGAAAGAGTACGT 350036 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||||||| || || ||| |||| | || ||||| || ||| | ||||| Sbjct 350035 CCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATACCTTCT 349976 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| ||||| ||| || | | ||| || ||| ||||| ||| | |||| Sbjct 349975 TTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGATGGCTCAACTTCCAAGGTG 349916 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| || | || || || || || ||||| Sbjct 349915 ATGGTCTTGCCAGTAAGAGTCTTAACGAAGATCTGCAT 349878 >seq6499 Length=11414 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| || | |||||| ||||||||||| |||||||| ||||| | | || | Sbjct 685 CTAAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAGAGAGAGTACGGCCG 744 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 ||||| || || || || ||| |||| || || || ||||| || | ||||| ||| Sbjct 745 TCTTCTAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATACCTTCTTTA 804 Query 18231 TCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 || ||| | |||| || || | | ||| || ||| |||||| ||| | |||||| Sbjct 805 TCCTGAATCT-TTGCTTTCACATTTTCAATCGTATCAGATGGCTCGACTTCTAAGGTGAT 863 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | | || || || | ||||| ||||| || ||||| Sbjct 864 GGTCTTTCCTGTGAGAGTTTTGACAAAGATCTGCAT 899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379264378302390