Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq684 120 3e-22 seq6499 107 2e-18 seq295 105 6e-18 seq4446 95.1 1e-14 >seq684 Length=498857 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||| || || || | || || ||||| || Sbjct 349194 ATGCAAATTTTTGTTAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTGGAACCCTCT 349253 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| || || | ||| ||||||||||| | || || || ||| Sbjct 349254 GACACTATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGGATTCCCCCTGATCAG 349313 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || || |||| || |||||||| |||||||| || | || || | | || ||||| Sbjct 349314 CAACGATTAATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTAC-ATTATCTGACTATAA 349372 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| ||||| ||||| || ||||| | || || |||| Sbjct 349373 TATTCAAAAGGAATCTACTCTGCATCTTGTCCTTAGGTTAAGAGGAGGTA 349422 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || ||||| || |||||||| || || | || |||||||| || Sbjct 348966 ATGCAGATTTTTGTGAAAACTCTTACTGGCAAAACTATTACATTAGAAGTTGAACCATCT 349025 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | || ||||| ||||| | || || || || Sbjct 349026 GACACTATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCACCAGATCAA 349085 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | ||||| ||||| |||||| | ||||| | ||| | ||||| ||| Sbjct 349086 CAGAGGTTGATATTTGCTGGAAAACAGCTTGAAGATGGAAGAACTCTCTCTGATTACAAC 349145 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| |||||||| ||||||||||| || ||| Sbjct 349146 ATTCAGAAAGAATCCACTCTTCATCTTGTTCTT 349178 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || ||||||||||| |||||||| || |||||| | || ||||| ||||| Sbjct 348510 ATGCAGATCTTTGTAAAGACTCTCACAGGCAAGACCATCACCTTGGAAGTTGAGCCGTCT 348569 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || || ||| ||| || ||||| | || || ||||| Sbjct 348570 GATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAAGGAATCCCCCCAGACCAA 348629 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || || |||||||| ||| | || ||||| Sbjct 348630 CAGAGGTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGTACTCTTTCAGACTATAAT 348689 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || ||||| ||||| || ||| |||| || || |||| Sbjct 348690 ATCCAGAAAGAGTCTACTCTCCATCTTGTCCTTCGACTCAGAGGTGGTA 348738 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || ||||| ||||| || || |||||| | || ||||| || || Sbjct 348738 ATGCAGATTTTTGTGAAAACTCTAACAGGAAAGACCATCACCTTGGAAGTTGAGCCATCT 348797 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || ||| | ||| ||| || ||||| | || || || ||| Sbjct 348798 GATACTATTGAAAATGTGAAAGCAAAAATTCAGGATAAAGAAGGTATTCCTCCAGATCAG 348857 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | ||||| || || || ||||| || ||||| || || || ||||| Sbjct 348858 CAGAGGCTAATCTTTGCAGGTAAACAATTAGAAGATGGCCGAACCTTGTCTGACTATAAT 348917 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 |||||||||||||| |||||||| Sbjct 348918 ATTCAAAAAGAATCCACTCTTCA 348940 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || ||||| || |||||| | || ||||| || || Sbjct 350106 ATGCAGATCTTTGTTAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTTGAGCCATCT 350165 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || ||| | || ||||| ||||| | || || || ||| Sbjct 350166 GACACCATCGAAAATGTAAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 350225 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTAT 31369 ||| | | || || ||||| || ||| | ||||| | || | || | | | ||| Sbjct 350226 CAGAGGTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACG-CTCTCTG--ACTAT 350282 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||||||| || ||||| ||| | || || |||| Sbjct 350283 AACATTCAAAAAGAGTCAACTCTCCATTTAGTTCTGCGACT 350323 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || || || | || ||||| || |||||| | || || || || Sbjct 348278 AAAAATGCAGATCTTTGTGAAAACATTAACTGGCAAGACCATCACCTTGGAAGTGGAGCC 348337 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | | || | || || | || |||||| ||||| | || || || Sbjct 348338 CTCTGATACCATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGAATCCCTCCAGA 348397 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||| || | | || || ||||| || ||| | ||||| || || || || Sbjct 348398 CCAACAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACGTTGTCTGACTA 348457 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || ||||||||||| ||||||||||| || ||||||||||| || |||| Sbjct 348458 TAATATCCAAAAAGAATCTACTCTTCATCTTGTCCTTAGACTGAGAGGGGGTA 348510 >seq6499 Length=11414 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || ||||| ||||| || || |||||| | || || || || || Sbjct 900 CATGCAGATCTTTGTCAAAACTCTCACAGGAAAGACCATCACCTTAGAAGTCGAGCCATC 841 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | | |||| || ||| || ||| | ||| || ||||| | || || || | Sbjct 840 TGATACGATTGAAAATGTGAAAGCAAAGATTCA-GGATAAAGAAGGTATTCCTCCAGATC 782 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || || || ||||| || ||||| |||||| ||| | || |||| Sbjct 781 AGCAGAGGCTGATCTTTGCTGGAAAGCAGTTAGAAGACGGCCGTACTCTCTCTGACTATA 722 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||| |||||||| |||||||| || || ||||| |||| || |||| Sbjct 721 ACATTCAGAAAGAATCAACTCTTCACCTTGTTCTTAGGTTGAGAGGTGGTA 671 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||| || || || ||||| || |||||| | || || || || || Sbjct 671 ATGCAAATCTTTGTAAAAACACTTACTGGCAAGACTATCACCCTGGAAGTAGAGCCATCA 612 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || | || ||||| ||||| | || || || ||| Sbjct 611 GATACTATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAG 552 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| || ||| | ||||| | ||| | ||||| ||| Sbjct 551 CAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAAGATGGAAGAACTCTCTCTGATTACAAC 492 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || || || ||||||||||| ||| || |||| || || Sbjct 491 ATTCAAAAGGAGTCAACGCTTCATCTGGTCCTTCGATTGAGAGGAGG 445 >seq295 Length=498498 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 |||||||||||| |||||||||| || || |||| || | || || || || ||||| Sbjct 344242 CATAAAAAGATCAGGTATCCATAATGCATAAAACAAATCTCTTGCTCGAACTTCTTCTTT 344301 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 || ||||| || |||||||| | ||| || ||||| || |||||||| || || | || Sbjct 344302 CCCAGTGTTTTTCTTCAAATCAAGAAATTCTAACACATCTGCATGCCAGGGTTCTAAATA 344361 Query 23473 AACGGCAAACGCGCCCGGTCTCT 23495 |||||||| || || || |||| Sbjct 344362 GACGGCAAAAGCACCAGGCCTCT 344384 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/185 (72%), Gaps = 9/185 (5%) Strand=Plus/Plus Query 22493 TAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAA 22552 || || || |||||| | ||||||||||| ||||||||||| ||||| || || || || Sbjct 324076 TATATATTTGATGTGTATGGTTCGAAAGACTCATTGTTTCCAAGTATTTGGGCAGTTGAT 324135 Query 22553 GCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTC 22612 || || ||||| || || | || ||| |||||| | | || | | ||||| || Sbjct 324136 GCTGTAGGCATTGGAGCAATCAATAGAGAGTTTTTTAGACCATTAGCCAATATTTT-TTC 324194 Query 22613 TT---GAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTAT 22669 || ||||| ||||||||||||| | | || ||||||| ||||||||| || Sbjct 324195 TTTCAGAGCA--GACCAGTCCCACAAGTTAGTGGGTTTCACATT---CCACATATCATAC 324249 Query 22670 TGCAA 22674 ||||| Sbjct 324250 TGCAA 324254 >seq4446 Length=45416 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596 |||||||| || ||||| |||||||||| || |||||||| ||||||||||| || ||| Sbjct 5308 AGATTTGTTATATTTCCCATTGAATATCATGATATTTGGAAGATGTACAAAAAAGCCGAA 5367 Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGG 57636 || || |||||||| | |||||||| || | || |||| Sbjct 5368 GCTTCATTTTGGACAGCAGAAGAAGTTGATTTATCAAAGG 5407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445670437638240