Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq295 109 7e-19 seq4446 105 8e-18 >seq295 Length=498498 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62987 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 ||||| || ||| ||||||||||||||||||||||| |||||||||| ||||| ||| || Sbjct 334499 ATATTCTACTATTTCAGTGCAAAGATTACTACACTTAATAGTTCCTAGATTTTTTTGGTT 334558 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 || | ||||||||||| || || | ||| | || ||| ||||||| |||| Sbjct 334559 TGATTTCCTATTACACGCATCTTTGTATAACATGTAAGGGACACCTGTTTCAACTTGAGC 334618 Query 63107 TTCTATAATCGCTTTCCA 63124 ||||| || |||||||| Sbjct 334619 CTCTATTATGGCTTTCCA 334636 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 63669 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63728 ||||||||||||||||||||||| || || || || ||||| | |||||||| || Sbjct 347896 GCATTAAATAAGGTAGGAGAAGCATGAGTGAAATATCCCTCAGATAAGAGATTGTAGGTA 347955 Query 63729 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63788 ||||||| || ||||| |||||| || || || || | ||| |||||||| Sbjct 347956 GTAATAGCTTCATCAATATCTTCCCCATGAATACCAACAGCCACTCTCATCAACATGTGT 348015 Query 63789 TGAGGTCTTTCAACAATTTT 63808 || || ||||| |||| ||| Sbjct 348016 TGTGGCCTTTCTACAACTTT 348035 >seq4446 Length=45416 Score = 105 bits (116), Expect = 8e-18 Identities = 117/154 (76%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 33232 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC--TTGA-GACATAACTCCCA 33288 || ||||||| ||| |||| |||| |||| | | ||| | |||| ||||| || || Sbjct 20947 TTATTTAAAAATCAGCATCCAAAGTAAAAACACTTTCTGCCTTTGATGACATCACGCCAG 20888 Query 33289 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33348 ||| |||||||||||||| ||| || || ||||||||||| ||||| | ||| |||| Sbjct 20887 CTTTCTGGTATTCACCCACTTTTTTCTCAAAGAAATTAGTTTTGCCTTCAAGTGAAATAT 20828 Query 33349 TTTCCATGAAATCAAACGGATTGGTAACATTGTA 33382 |||||||| ||||| || || || ||||||| Sbjct 20827 GCTCCATGAAGTCAAATGGGTTTGTTGCATTGTA 20794 Score = 102 bits (112), Expect = 1e-16 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 34121 ||| |||| |||| ||| |||||||| ||||||||||||| || || || ||||| ||| Sbjct 5410 ATACCTTT-GATAAATCAACTTCTTCTGCTGTCCAAAATGAAGCTTCGGCTTTTTTGTAC 5352 Query 34122 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 || ||||| || |||||||||| || || || ||||||||||| |||| || Sbjct 5351 ATCTTCCAAATATCATGATATTCAATGGGAAATATAACAAATCTTCTTGGGTT 5299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629682016016160