Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4446 107 3e-18 seq295 105 9e-18 seq11114 86.0 8e-12 >seq4446 Length=45416 Score = 107 bits (118), Expect = 3e-18 Identities = 87/104 (84%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 36638 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 36697 ||| |||| |||| ||| |||||||| ||||||||||||| || || || ||||| ||| Sbjct 5410 ATACCTTT-GATAAATCAACTTCTTCTGCTGTCCAAAATGAAGCTTCGGCTTTTTTGTAC 5352 Query 36698 ATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 || ||||| || |||||||||| ||| ||||| ||||||||||| Sbjct 5351 ATCTTCCAAATATCATGATATTCAATGGGAAATATAACAAATCT 5308 Score = 96.9 bits (106), Expect = 5e-15 Identities = 108/142 (76%), Gaps = 3/142 (2%) Strand=Plus/Minus Query 35808 TTCTTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTC--TTGA-GACATAACTCCCA 35864 || ||||||||||| |||| | || |||| | | ||| | |||| ||||| || || Sbjct 20947 TTATTTAAAAATCAGCATCCAAAGTAAAAACACTTTCTGCCTTTGATGACATCACGCCAG 20888 Query 35865 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 35924 ||| |||||||||||||| ||| || || ||||||||||| ||||| | ||| |||| Sbjct 20887 CTTTCTGGTATTCACCCACTTTTTTCTCAAAGAAATTAGTTTTGCCTTCAAGTGAAATAT 20828 Query 35925 TTTCCATGAAATCGAATGGATT 35946 |||||||| || ||||| || Sbjct 20827 GCTCCATGAAGTCAAATGGGTT 20806 >seq295 Length=498498 Score = 105 bits (116), Expect = 9e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 65780 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 65839 ||||| || ||| ||||||||||||||||||||||| || ||||||| ||||| ||| || Sbjct 334499 ATATTCTACTATTTCAGTGCAAAGATTACTACACTTAATAGTTCCTAGATTTTTTTGGTT 334558 Query 65840 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899 || | ||||||||||| || || | ||| | || ||| ||||||| |||| Sbjct 334559 TGATTTCCTATTACACGCATCTTTGTATAACATGTAAGGGACACCTGTTTCAACTTGAGC 334618 Query 65900 TTCTATAATCGCTTTCCA 65917 ||||| || |||||||| Sbjct 334619 CTCTATTATGGCTTTCCA 334636 >seq11114 Length=6469 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | |||||| ||||||||||||| |||||| || || ||||| || || | | Sbjct 821 CACTGAAAACTTTTTTAGTTTCTTTGTGTAAATTTGAAACAGCAATTCTGGCAGCGAGCA 880 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 |||||||| ||||| | ||||| || || || |||| || || | | | || | Sbjct 881 ATGCATAATCTGGATGCTTAGTAGTCATTGTAGCAGCAGTTTCTGCGGCTAAATTATCTA 940 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAA 66975 |||| || || | ||||||| ||| | || ||||| ||||| | |||| || Sbjct 941 ATTCAACTGTGGATACTCCAGGATAAAGCCCAGATATAACTTTCATTGTAATTTCAA 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658031111850480