Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq684 109 5e-19 seq6499 98.7 1e-15 >seq684 Length=498857 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||||||||||| || || ||||||||||| ||||| || || || | Sbjct 348952 CGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAGACAAGGTTCGGCCA 348893 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | |||||||| ||| |||| || | |||||||| ||||| || |||||||| Sbjct 348892 TCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAGGAATACCTTCTTTA 348833 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||||| ||| | | ||| | || || | ||||| || || | ||| | Sbjct 348832 TC-CTGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTGAT 348774 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || || | ||||| || || || |||||| Sbjct 348773 GGTCTTTCCTGTTAGAGTTTTCACAAAAATCTGCATA 348737 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| |||||| || | || |||||||||||||||||||| || | || | Sbjct 350320 CGCAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAGTCAGAGAGCGTACGGCCA 350261 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| ||||||||| |||||| | |||||||| || || || ||||||||| Sbjct 350260 TCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGAATTCCTTCTTTG 350201 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||||| | ||| | ||||| | ||||| || || | ||| | Sbjct 350200 TC-TTGAATCTTGGCTTTTACATTTTCGATGGTGTCAGATGGCTCAACTTCCAAGGTGAT 350142 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| || | || || || || || |||||| Sbjct 350141 GGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCATA 350105 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||||| |||||||| || ||||| || || || | ||||| ||||| Sbjct 348484 TGAAGAGTAGATTCTTTTTGGATATTATAGTCAGACAACGTTCGGCCATCTTCAAGCTGC 348425 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | |||| | ||| || || ||||| || ||||||||||| ||| || Sbjct 348424 TTTCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGGATTCCTTCTTTGTCCTGGATCTTA 348365 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | || || | ||||||||| || | ||| | |||||||| || Sbjct 348364 GCCTTAACATTCTCAATGGTATCAGAGGGCTCCACTTCCAAGGTGATGGTCTTGCCAGTT 348305 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 || ||||| || || || ||||| Sbjct 348304 AATGTTTTCACAAAGATCTGCAT 348282 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || |||||||| ||||| || | ||| | || || | ||| || ||| Sbjct 349390 GTAGATTCCTTTTGAATATTATAGTCAGATAATGTACGACCATCCTCCAACTGCTTGCCA 349331 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | || | ||||||||||| || || || ||||| ||||| |||||| || Sbjct 349330 GCAAAAATTAATCGTTGCTGATCAGGGGGAATCCCTTCCTTGTCTTGGATTTTAGCCTTA 349271 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| | ||| |||||||||| || | |||||||| || | || Sbjct 349270 ACATTTTCAATAGTGTCAGAGGGTTCCACCTCAAGAGTAATAGTCTTGCCAGTAAGAGTC 349211 Query 139748 TTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 349210 TTAACAAAAATTTGCAT 349194 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || || | || || || || ||||||||||| Sbjct 349618 GTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCATCCTCAAGCTGTTTACCT 349559 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||| || | |||||||| || || || |||||||| || ||| |||| | || Sbjct 349558 GCAAAGATTAGCCTCTGCTGATCTGGTGGAATTCCTTCTTTATC-CTGAATTTTAGCCTT 349500 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | || || | ||||| ||||| | ||| | |||||||| || | || Sbjct 349499 GACATTTTCAATCGTATCTGATGGCTCAACCTCCAAGGTAATGGTCTTGCCTGTGAGAGT 349440 Query 139747 TTTTACGAATATTTGCATAGCT 139768 ||| || || || |||||| || Sbjct 349439 TTTAACAAAGATCTGCATACCT 349418 >seq6499 Length=11414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||||| ||||||||||| ||||| | || || ||||| ||||| Sbjct 469 TGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGCTGC 528 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 |||||||| |||||| | |||||||| || || || ||||||||||| ||| || Sbjct 529 TTACCAGCGAAGATCAACCTCTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTG 588 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | || || | ||||| || || | ||| | |||||||| || Sbjct 589 GCCTTCACATTCTCAATAGTATCTGATGGCTCTACTTCCAGGGTGATAGTCTTGCCAGTA 648 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | |||||||| || ||||||||| Sbjct 649 AGTGTTTTTACAAAGATTTGCATA 672 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || || ||||| ||||||||||| || | || | |||||| Sbjct 690 AACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAGAGAGAGTACGGCCGTCTTC 749 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||| || |||||| ||||||| | |||||||| ||||| || |||||||| || | Sbjct 750 TAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATACCTTCTTTATC-CT 808 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | |||| ||| | | ||| | || || | ||||| || || | ||| | |||| Sbjct 809 GAATCTTTGCTTTCACATTTTCAATCGTATCAGATGGCTCGACTTCTAAGGTGATGGTCT 868 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || | ||||| || || || ||||| Sbjct 869 TTCCTGTGAGAGTTTTGACAAAGATCTGCAT 899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495957209822400