Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq295 105 1e-17 seq4446 102 1e-16 seq11114 89.7 7e-13 >seq295 Length=498498 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 ||||| || |||||||||||| || |||||||||||||| ||||||| ||||| ||| || Sbjct 334499 ATATTCTACTATTTCAGTGCAAAGATTACTACACTTAATAGTTCCTAGATTTTTTTGGTT 334558 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 || | ||||||||||| || || | ||| | || ||| ||||||| |||| Sbjct 334559 TGATTTCCTATTACACGCATCTTTGTATAACATGTAAGGGACACCTGTTTCAACTTGAGC 334618 Query 79779 TTCTATAATCGCTTTCCA 79796 ||||| || |||||||| Sbjct 334619 CTCTATTATGGCTTTCCA 334636 Score = 86.0 bits (94), Expect = 9e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || |||||||| ||||| | || | || || || ||||| || |||||||| | Sbjct 324043 ACCTGAAATTCCCCAGAGAGAACACGCCTAGAATATATATTTGATGTGTATGGTTCGAAA 324102 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||| ||||| | ||||| ||||||||||| || ||||| || || | ||||| | Sbjct 324103 GACTCATTGTTTCCAAGTATTTGGGCAGTTGATGCTGTAGGCATTGGAGCAATCAATAGA 324162 Query 79180 CTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239 ||| | ||||| | | ||||| ||||| |||| ||| ||||| | | | Sbjct 324163 GAGTTTTTTAGACCATTAGCCAATATTTTTTCTTTCAGAGCAGACCAGTCCCACAAGTTA 324222 Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 | || |||||||| | |||||| || | ||| Sbjct 324223 GTGGGTTTCACATTCCACATATCATACTGCAAAAT 324257 >seq4446 Length=45416 Score = 102 bits (112), Expect = 1e-16 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 ||| |||| |||| ||| |||||||| ||||||||||||| || || || ||||| ||| Sbjct 5410 ATACCTTT-GATAAATCAACTTCTTCTGCTGTCCAAAATGAAGCTTCGGCTTTTTTGTAC 5352 Query 50500 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || ||||| || |||||||||| || || || ||||||||||| |||| || Sbjct 5351 ATCTTCCAAATATCATGATATTCAATGGGAAATATAACAAATCTTCTTGGGTT 5299 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 49610 TTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTC--TTGA-GACATAACTCCCA 49666 || ||||||| ||| |||| | || |||| | | ||| | |||| ||||| || || Sbjct 20947 TTATTTAAAAATCAGCATCCAAAGTAAAAACACTTTCTGCCTTTGATGACATCACGCCAG 20888 Query 49667 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 49726 ||| |||||||||||||| ||| || || ||||||||||| ||||| | ||| |||| Sbjct 20887 CTTTCTGGTATTCACCCACTTTTTTCTCAAAGAAATTAGTTTTGCCTTCAAGTGAAATAT 20828 Query 49727 TTTCCATGAAATCAAACGGATTGGTAACATTATA 49760 |||||||| ||||| || || || |||| || Sbjct 20827 GCTCCATGAAGTCAAATGGGTTTGTTGCATTGTA 20794 >seq11114 Length=6469 Score = 89.7 bits (98), Expect = 7e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | |||||| ||||| ||||||| |||||| || || |||||||| || | | Sbjct 821 CACTGAAAACTTTTTTAGTTTCTTTGTGTAAATTTGAAACAGCAATTCTGGCAGCGAGCA 880 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 |||||||||||||| | ||||| || || || |||| || || | | | || | Sbjct 881 ATGCATAATCTGGATGCTTAGTAGTCATTGTAGCAGCAGTTTCTGCGGCTAAATTATCTA 940 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAA 80854 |||| || || | ||||||| ||| | || ||||| ||||| | |||| || Sbjct 941 ATTCAACTGTGGATACTCCAGGATAAAGCCCAGATATAACTTTCATTGTAATTTCAA 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718114174684080