Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq245 91.5 1e-13 seq182 84.2 2e-11 >seq245 Length=632274 Score = 91.5 bits (100), Expect = 1e-13 Identities = 129/177 (73%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 139045 GGTGGTGTTTTACATACAAAATTTTTAATTTCGGATGAGTTAAATGCATATAT--TGGAA 139102 ||||| | |||||||| ||||| | | |||| || |||| ||| ||| ||||| Sbjct 185501 GGTGGAATATTACATACGAAATTGTGGTTAGTGGAT-AGAAAAAT-CATTTATGTTGGAA 185558 Query 139103 GCGCTAATATGGATTGGAGGTCTCTATCTCAAGTTAAAGAACTTGGTATAGGCATTTACA 139162 | ||||||||||||||||| ||||| ||||| ||||||||||||||||| | ||| | | Sbjct 185559 GTGCTAATATGGATTGGAGATCTCTGTCTCATGTTAAAGAACTTGGTATTGTTATTAAAA 185618 Query 139163 ATTCTTCATGTTTGGTAATGGATTTAATAAAAATCTTTAATG--AGTATTGTTATAT 139217 | | ||| || | || || | ||||| ||| ||| |||||||||| || Sbjct 185619 ACTGTTCTTGCCTTGTGGAAGACATGGCTAAAATATTTGATGTAAGTATTGTTACAT 185675 >seq182 Length=940095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 121415 GTATGGGAAATATCCGGATCTAGTTTTACAAAATCTATACATCACACAGCAGATGGTATT 121474 |||||||||||| | ||| || | |||||| | | ||||||||||||||||||| Sbjct 166894 GTATGGGAAATAACAGGAGCTGAACTGACAAAAAATGTGGTTCACACAGCAGATGGTATT 166835 Query 121475 TCAATAAGATTTCCTAGATTTaaaaaaaTTAGATATGATAAAAATTGGTTATCTGCTACA 121534 || | |||||||||||| ||| ||||||||| |||||| | ||| | | || ||| Sbjct 166834 TCTGTTAGATTTCCTAGAGTTACTAAAATTAGAAGCGATAAAGACTGGAAAACAGCCACA 166775 Query 121535 A 121535 | Sbjct 166774 A 166774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479624726554800