Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq684 91.5 1e-13 >seq684 Length=498857 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | || | ||| | |||| || || || | |||||||| || Sbjct 349192 CCTCCACGGAGCCGAAGAACAAGATGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGAG 349133 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || | ||||| || ||||| ||||| | ||||||||| | || Sbjct 349132 AGAGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAATATCAACCTCTGTTGATCTGGTGGG 349073 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | ||||| | ||| ||||| | || || Sbjct 349072 ATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATAGTGTCAGATGGTTCAACT 349013 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || |||||||| || || ||||||||||||||||| |||||| Sbjct 349012 TCTAATGTAATAGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCATT 348965 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || || || || | |||| || ||||| | ||| || || ||| Sbjct 348964 CCACCACGAAGGCGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAGAC 348905 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || || |||||||| || ||||| || | | ||| ||||| | || Sbjct 348904 AAGGTTCGGCCATCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAGGA 348845 Query 43003 ACACCTTCTTTTTCGCTGATCAACT-CTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || |||| | |||| || | ||| || || | ||| || Sbjct 348844 ATACCTTCTTTATC-CTGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCAAC 348786 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| |||||||||||||||||||| ||||| Sbjct 348785 TTCCAAGGTGATGGTCTTTCCTGTTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||| || || || |||||||| | || ||||| || ||||| |||||| Sbjct 349384 TCCTTTTGAATATTATAGTCAGATAATGTACGACCATCCTCCAACTGCTTGCCAGCAAAA 349325 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || ||||| || ||||| | || | ||||| || || ||| | || || | Sbjct 349324 ATTAATCGTTGCTGATCAGGGGGAATCCCTTCCTTGTCTTGGATTTTAGCCTTAACATTT 349265 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||| | || || || | || ||||| || || || ||||| || ||| Sbjct 349264 TCAATAGTGTCAGAGGGTTCCACCTCAAGAGTAATAGTCTTGCCAGTAAGAGTCTTAACA 349205 Query 43099 AAAATTTGCATT 43110 |||||||||||| Sbjct 349204 AAAATTTGCATT 349193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381289553142876