Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4446 114 2e-20 seq295 100 4e-16 seq11114 98.7 1e-15 >seq4446 Length=45416 Score = 114 bits (126), Expect = 2e-20 Identities = 94/113 (83%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 42545 ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATAC 42604 ||| |||| |||| ||| ||||||||| | ||||||||||| ||||| || ||||| ||| Sbjct 5410 ATACCTTT-GATAAATCAACTTCTTCTGCTGTCCAAAATGAAGCTTCGGCTTTTTTGTAC 5352 Query 42605 ATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 || ||||| ||||||||||||| ||| || || ||||||||||| |||| || Sbjct 5351 ATCTTCCAAATATCATGATATTCAATGGGAAATATAACAAATCTTCTTGGGTT 5299 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 41715 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC--TTGA-GACATAACTCCCA 41771 || ||||||| ||| |||| |||| |||| | | ||| | |||| ||||| || || Sbjct 20947 TTATTTAAAAATCAGCATCCAAAGTAAAAACACTTTCTGCCTTTGATGACATCACGCCAG 20888 Query 41772 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATAT 41831 ||| |||||||||||||| ||| || || |||||||| || ||||| | ||| |||| Sbjct 20887 CTTTCTGGTATTCACCCACTTTTTTCTCAAAGAAATTAGTTTTGCCTTCAAGTGAAATAT 20828 Query 41832 TTTCCATGAAATCAAACGGATTGGTAACATTATA 41865 |||||||| ||||| || || || |||| || Sbjct 20827 GCTCCATGAAGTCAAATGGGTTTGTTGCATTGTA 20794 >seq295 Length=498498 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 71742 ATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 71801 ||||| || |||||||||||||||||||||||||| || ||||||| ||||| ||| || Sbjct 334499 ATATTCTACTATTTCAGTGCAAAGATTACTACACTTAATAGTTCCTAGATTTTTTTGGTT 334558 Query 71802 ACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861 || | ||||||||||| || || | || | || ||| ||||||| |||| Sbjct 334559 TGATTTCCTATTACACGCATCTTTGTATAACATGTAAGGGACACCTGTTTCAACTTGAGC 334618 Query 71862 TTCTATAATCGCTTTCCA 71879 ||||| || |||||||| Sbjct 334619 CTCTATTATGGCTTTCCA 334636 >seq11114 Length=6469 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | |||||| ||||| ||||||| |||||| || || |||||||| || || | Sbjct 821 CACTGAAAACTTTTTTAGTTTCTTTGTGTAAATTTGAAACAGCAATTCTGGCAGCGAGCA 880 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||||||||||||| | ||||| || || || ||||||| || | | | || | Sbjct 881 ATGCATAATCTGGATGCTTAGTAGTCATTGTAGCAGCAGTTTCTGCGGCTAAATTATCTA 940 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAA 72937 |||| || || | ||||||| ||| | || ||||| ||||| | |||| || Sbjct 941 ATTCAACTGTGGATACTCCAGGATAAAGCCCAGATATAACTTTCATTGTAATTTCAA 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670994720508720