Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq684 113 3e-20 seq6499 89.7 4e-13 >seq684 Length=498857 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || || || || || ||| ||||||||||||||||| || || || |||| Sbjct 348949 AAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAGACAAGGTTCGGCCATCT 348890 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || |||||||| |||||||| || | || ||||| || |||| | |||||||||||| Sbjct 348889 TCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAGGAATACCTTCTTTATCC 348830 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||||| ||| || | ||| |||||| | ||||| || || | || || || Sbjct 348829 TGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTGATGGTC 348770 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||| ||| |||||||| || ||||| Sbjct 348769 TTTCCTGTTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| || || | || | ||| || || || |||||||||||||| || Sbjct 349421 ACCTCCTCTTAACCTAAGGACAAGATGCAGAGTAGATTCCTTTTGAATATTATAGTCAGA 349362 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| ||| |||| ||||| || || || ||||| || || |||||||| || | || Sbjct 349361 TAATGTACGACCATCCTCCAACTGCTTGCCAGCAAAAATTAATCGTTGCTGATCAGGGGG 349302 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||||| || || | ||| ||| || | || ||||| Sbjct 349301 AATCCCTTCCTTGTCTTGGATTTTAGCCTTAACATTTTCAATAGTGTCAGAGGGTTCCAC 349242 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | |||||| ||||| |||||||| Sbjct 349241 CTCAAGAGTAATAGTCTTGCCAGTAAGAGTCTTAACAAAAATTTGCAT 349194 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | || | || | ||| || || |||||| || |||||||| || | Sbjct 348737 ACCACCTCTGAGTCGAAGGACAAGATGGAGAGTAGACTCTTTCTGGATATTATAGTC-TG 348679 Query 43954 TAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || | ||| |||| |||||||| || || ||||| ||||||| || ||||| | | Sbjct 348678 AAAGAGTACGGCCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGG 348619 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||||||||| |||||| || || | ||| ||||| | |||||| | Sbjct 348618 GGATTCCTTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGACGGCTCAA 348559 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || || || || || | |||||| ||||| || ||||| Sbjct 348558 CTTCCAAGGTGATGGTCTTGCCTGTGAGAGTCTTTACAAAGATCTGCAT 348510 >seq6499 Length=11414 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| | | || | ||| || ||| ||| ||||| || || || || Sbjct 1128 ACCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTC--- 1184 Query 43954 TAATTGACG-CT--CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTG 44010 | | || || |||| || | ||||| |||||||| ||||||| || || || | Sbjct 1185 TGAGAGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAAATCAACCTCTGTTGATCTGG 1244 Query 44011 AGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTC 44070 || | ||||||||||| |||||| ||||| | ||| |||||||| ||||| Sbjct 1245 TGGGATTCCTTCTTTATCCTGAATTTTAGCCTTGACATTTTCAATAGTATCTGATGGCTC 1304 Query 44071 CACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||||| || || || || | |||||| ||||| || ||||| Sbjct 1305 AACCTCCAAGGTAATGGTCTTGCCTGTGAGAGTCTTAACAAAGATCTGCAT 1355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| ||||| | || | ||| || || ||| ||||||||||| || || Sbjct 216 ACCTCCTCTTAATCTAAGGACAAGATGGAGGGTTGACTCCTTTTGAATATTGTAGTCTGA 275 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | ||| |||| || | || || || || || ||||||| ||||| || |||| Sbjct 276 GAGTGTACGTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGG 335 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| ||||| || || ||| || | | | || || | ||||||||| Sbjct 336 AATACCTTCCTTATCCTGTATCTTAGCTTTTACATTTTCGATTGTGTCAGACGGCTCCAC 395 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || ||||| || | || || ||||| ||||||||| Sbjct 396 TTCCAGGGTTATGGTCTTACCAGTGAGTGTTTTAACAAAGATTTGCATG 444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354703134620856