Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq684 136 4e-27 seq6499 127 2e-24 >seq684 Length=498857 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || ||||| | ||| ||||| ||||| | ||||| || || || | | Sbjct 348952 CGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAGACAAGGTTCGGCCA 348893 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || | ||||| || ||||||||| || |||||||||||||||||||||||||| Sbjct 348892 TCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAGGAATACCTTCTTTA 348833 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||||||| || || | | ||| |||| | || || || | |||||| Sbjct 348832 TCCTGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTGATG 348773 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || |||||||||||||| |||||||| Sbjct 348772 GTCTTTCCTGTTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 132 bits (146), Expect = 4e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| || | | || | |||| ||||||||||||||| | ||||| || Sbjct 349420 CCTCCTCTTAACCTAAGGACAAGATGCAGAGTAGATTCCTTTTGAATATTATAGTCAG-- 349363 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| ||| || |||||||| ||| || || |||| ||||||| ||||||||| || | Sbjct 349362 ATAATGTACGACCATCCTCCAACTGCTTGCCAGCAAAAATTAATCGTTGCTGATCAGGGG 349303 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||| ||||| | ||||| ||||| || | | |||||||| | | || | Sbjct 349302 GAATCCCTTCCTTGTCTTGGATTTTAGCCTTAACATTTTCAATAGTGTCAGAGGGTTCCA 349243 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| || || || || ||||||||||| || ||||| || ||||| Sbjct 349242 CCTCAAGAGTAATAGTCTTGCCAGTAAGAGTCTTAACAAAAATTTGCAT 349194 Score = 125 bits (138), Expect = 6e-24 Identities = 174/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAG-TGCAAAGTAGATTCCTTTTGCA 94826 |||| ||| || |||||| | | || || | |||| || | ||| ||||| || || | Sbjct 349205 AAAAATTTGCATTCCTCCACGGAGCCG-AAGAACAAGATGAAGAGTGGATTCTTTCTGAA 349147 Query 94827 CGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 ||| ||||| | ||| | ||| || ||||||||||| |||| || || || | Sbjct 349146 TGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAATATCAACCTCT 349087 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | |||||||| || || ||||||||||| | || || |||||||| | | ||||| Sbjct 349086 GTTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATAGTGT 349027 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| | || || || | || || ||||| |||||||||||||||||||| ||||||| Sbjct 349026 CAGATGGTTCAACTTCTAATGTAATAGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCA 348967 Query 95007 T 95007 | Sbjct 348966 T 348966 Score = 122 bits (134), Expect = 8e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||||||||| || | || | || | || || |||||||| | Sbjct 349661 AAAAATCTGCATACCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTAT 349602 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || | ||| | |||||| |||||||| || ||||||||| || || Sbjct 349601 GTTGTAGTCTGAGAGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAGATTAGCCTCTG 349542 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||||||| ||||| |||||||| || | |||||| |||||||| | | || || Sbjct 349541 CTGATCTGGTGGAATTCCTTCTTTATCCTGAATTTTAGCCTTGACATTTTCAATCGTATC 349482 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | || ||||| || || || |||||||| |||||||||||||| Sbjct 349481 TGATGGCTCAACCTCCAAGGTAATGGTCTTGCCTGTGAGAGTTTTAACAAAGATCTGCAT 349422 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||||| || || || | ||| || || ||||| | |||||| || Sbjct 350332 CCTCCACGAAGTCGCAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAGTCAGAG 350273 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || ||||| || || ||||||| || || ||||||||||| ||| Sbjct 350272 AGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGA 350213 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | ||| || || || || ||| ||||||| | || || Sbjct 350212 ATTCCTTCTTTGTCTTGAATCTTGGCTTTTACATTTTCGATGGTGTCAGATGGCTCAACT 350153 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||||||||| || |||||||||||||| Sbjct 350152 TCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 350106 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || | || | || | ||||||||| ||||| | ||||| || | Sbjct 348508 CCCCCTCTCAGTCTAAGGACAAGATGAAGAGTAGATTCTTTTTGGATATTATAGTCAGAC 348449 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || ||||| ||||| |||| || || ||||| || |||||||| Sbjct 348448 AACGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGG 348389 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | || || ||||| || | | || |||| | | || || Sbjct 348388 ATTCCTTCTTTGTCCTGGATCTTAGCCTTAACATTCTCAATGGTATCAGAGGGCTCCACT 348329 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| | |||||||||||||||||||| Sbjct 348328 TCCAAGGTGATGGTCTTGCCAGTTAATGTTTTCACAAAGATCTGCAT 348282 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||||||||| || || | || || || | ||| | ||| |||| || Sbjct 349853 GTGGAGAGTAGATTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCTTCCAATTG 349794 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || ||||||| || || || || ||||| ||||| ||||| || || | ||||| Sbjct 349793 CTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGAATTCCTTCCTTATCTTGTATTTT 349734 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 || || || ||| || |||| | | || || || | ||||||||||| ||||| Sbjct 349733 AGCTTTAACATTCTCGATGGTATCAGAGGGTTCCACTTCTAAAGTGATGGTTTTGCCAGT 349674 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||||||| |||||||| Sbjct 349673 AAGAGTTTTCACAAAAATCTGCAT 349650 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| || || || ||||||| || || || || ||||| || ||||||||||| Sbjct 350033 ATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATACCTTCTTT 349974 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | |||||| ||||| || | | || |||| | || || || | ||||| Sbjct 349973 ATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGATGGCTCAACTTCCAAGGTGAT 349914 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||||||||| || || ||||||||||| Sbjct 349913 GGTCTTGCCAGTAAGAGTCTTAACGAAGATCTGCAT 349878 Score = 86.0 bits (94), Expect = 6e-12 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || ||||| | ||| | || | || | |||||| || || || | Sbjct 348749 AAAAATCTGCATACCACCTCTGAGTCGAAGGACAAGATGGAGAGTAGACTCTTTCTGGAT 348690 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||||| || | ||| | ||| |||| || || || ||||||| || || || Sbjct 348689 ATTATAGTCTGAAAGAGTACGGCCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTG 348630 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || ||||| || || |||||||| || | |||||| ||||| || | | || || Sbjct 348629 TTGGTCTGGGGGGATTCCTTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATC 348570 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || | |||||||| || || || ||||| || |||||||||||||| Sbjct 348569 AGACGGCTCAACTTCCAAGGTGATGGTCTTGCCTGTGAGAGTCTTTACAAAGATCTGCAT 348510 >seq6499 Length=11414 Score = 127 bits (140), Expect = 2e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 94762 TTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTT 94821 |||| ||| ||| || || |||||||| | | || | ||| | ||| ||||| || Sbjct 654 TTTTACAAAGATTTGCATACCACCTCTCAACCTAAGAACAAGGTGAAGAGTTGATTCTTT 713 Query 94822 TTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAA 94881 || | |||||| || | ||| | || || | ||| ||||| ||||||| | Sbjct 714 CTGAATGTTATAGTCAGAGAGAGTACGGCCGTCTTCTAACTGCTTTCCAGCAAAGATCAG 773 Query 94882 TCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGAC 94941 || |||||||||||||||||||||||||| || | ||| ||||| || || | | Sbjct 774 CCTCTGCTGATCTGGAGGAATACCTTCTTTATCCTGAATCTTTGCTTTCACATTTTCAAT 833 Query 94942 AGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGAT 95001 || |||| | ||||| || | |||||||| ||||| || |||||||| |||||||| Sbjct 834 CGTATCAGATGGCTCGACTTCTAAGGTGATGGTCTTTCCTGTGAGAGTTTTGACAAAGAT 893 Query 95002 CTGCATGC 95009 |||||||| Sbjct 894 CTGCATGC 901 Score = 118 bits (130), Expect = 1e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||||||||| | |||| || | || || |||||||| | ||| | Sbjct 437 TTTGCATGCCTCCTCTCAATCGAAGGACCAGATGAAGCGTTGACTCCTTTTGAATGTTGT 496 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 |||| | ||| | ||| || ||||| || || | ||||| || || ||||||| Sbjct 497 AATCAGAGAGAGTTCTTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGAT 556 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||| ||||||||||| | || || ||||| || | | ||| || | Sbjct 557 CTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATAGTATCTGATG 616 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||| || || |||||||| ||||| |||||||| ||||| Sbjct 617 GCTCTACTTCCAGGGTGATAGTCTTGCCAGTAAGTGTTTTTACAAAGATTTGCAT 671 Score = 109 bits (120), Expect = 5e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||||||||| || | || | || | || || |||||||| | Sbjct 1116 AAAAATCTGCATACCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTAT 1175 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || | ||| | |||||| |||||||| || |||| || || || || Sbjct 1176 GTTGTAGTCTGAGAGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAAATCAACCTCTG 1235 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||||| || || |||||||| || | |||||| |||||||| | | ||| || Sbjct 1236 TTGATCTGGTGGGATTCCTTCTTTATCCTGAATTTTAGCCTTGACATTTTCAATAGTATC 1295 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | || ||||| || || || ||||| || |||||||||||||| Sbjct 1296 TGATGGCTCAACCTCCAAGGTAATGGTCTTGCCTGTGAGAGTCTTAACAAAGATCTGCAT 1355 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | ||| || || | ||| | |||||| |||||||| || Sbjct 19 GTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCATCCTCAAGCTGTTTACCT 78 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 |||| || || || ||||||||||| || || ||||||||||| | || || ||||| Sbjct 79 GCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTC 138 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | |||||||| | || || || | || || || || |||||||| ||| Sbjct 139 ACATTCTCAATAGTGTCAGAAGGCTCTACTTCCAAGGTAATAGTCTTGCCAGTAAGTGTT 198 Query 94991 TTCACAAAGATCTGCAT 95007 || |||||||||||||| Sbjct 199 TTTACAAAGATCTGCAT 215 Score = 100 bits (110), Expect = 3e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| | || | || | || || |||||||| | || || || | Sbjct 217 CCTCCTCTTAATCTAAGGACAAGATGGAGGGTTGACTCCTTTTGAATATTGTAGTC--TG 274 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| | ||| || ||||| || || | ||||| || || ||||||||||||| Sbjct 275 AGAGTGTACGTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGAG 334 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||||||||| || || | || || || || || ||| ||||||| | || | Sbjct 335 GAATACCTTCCTTATCCTGTATCTTAGCTTTTACATTTTCGATTGTGTCAGACGGCTCCA 394 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | || ||||| || ||||| || ||||| |||||||| ||||||| Sbjct 395 CTTCCAGGGTTATGGTCTTACCAGTGAGTGTTTTAACAAAGATTTGCATGC 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448194694111920