Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq295 109 7e-19 seq4446 100 4e-16 >seq295 Length=498498 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62936 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 ||||| || ||| ||||||||||||||||||||||| |||||||||| ||||| ||| || Sbjct 334499 ATATTCTACTATTTCAGTGCAAAGATTACTACACTTAATAGTTCCTAGATTTTTTTGGTT 334558 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 || | ||||||||||| || || | ||| | || ||| ||||||| |||| Sbjct 334559 TGATTTCCTATTACACGCATCTTTGTATAACATGTAAGGGACACCTGTTTCAACTTGAGC 334618 Query 63056 TTCTATAATCGCTTTCCA 63073 ||||| || |||||||| Sbjct 334619 CTCTATTATGGCTTTCCA 334636 Score = 82.4 bits (90), Expect = 1e-10 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || |||||||| || |||| ||||| || |||||||| | || ||||||||||||| | Sbjct 344713 TTATTTCCTCCTTGGTCTACATATCTTGCAGTGTTATTGAATACCCTCAACATTGGAACA 344772 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT 63478 || || |||||||| ||||| || || | ||| | | || ||| |||||| Sbjct 344773 ATTCCATTTGATATTCCATTAGTTCCAGCAATAAATGTCCCTTTGGAACGAAT 344825 >seq4446 Length=45416 Score = 100 bits (110), Expect = 4e-16 Identities = 116/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 32954 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC--TTGA-GACATAACTCCCA 33010 || ||||||| ||| |||| |||| |||| | | ||| | |||| ||||| || || Sbjct 20947 TTATTTAAAAATCAGCATCCAAAGTAAAAACACTTTCTGCCTTTGATGACATCACGCCAG 20888 Query 33011 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33070 ||| |||||||||||||| ||| || || ||||||||||| ||||| | ||| |||| Sbjct 20887 CTTTCTGGTATTCACCCACTTTTTTCTCAAAGAAATTAGTTTTGCCTTCAAGTGAAATAT 20828 Query 33071 TTTCCATGAAATCAAACGGATTGGTAACATTATA 33104 |||||||| ||||| || || || |||| || Sbjct 20827 GCTCCATGAAGTCAAATGGGTTTGTTGCATTGTA 20794 Score = 96.9 bits (106), Expect = 4e-15 Identities = 90/113 (80%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33843 ||| |||| |||| ||| |||||||| ||||||||||||| || || || ||||| ||| Sbjct 5410 ATACCTTT-GATAAATCAACTTCTTCTGCTGTCCAAAATGAAGCTTCGGCTTTTTTGTAC 5352 Query 33844 ATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 || ||||| || |||| ||||| || || || ||||||||||| |||| || Sbjct 5351 ATCTTCCAAATATCATGATATTCAATGGGAAATATAACAAATCTTCTTGGGTT 5299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622813095041520