Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq684 100 2e-16 seq6499 96.9 3e-15 >seq684 Length=498857 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| || ||||| || || ||||| | || |||| | | || || |||||| Sbjct 348940 TGAAGAGTGGATTCTTTTTGAATATTATAGTCAGACAAGGTTCGGCCATCTTCTAATTGT 348881 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| || || ||| | || ||||| || ||||| Sbjct 348880 TTACCTGCAAAGATTAGCCTCTGCTGATCTGGAGGAATACCTTCTTTATCCTGAATTTT- 348822 Query 16853 TGCTT-CACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 ||||| ||| | | | ||| || ||||| ||||| ||||||||| ||||| || Sbjct 348821 TGCTTTCACATTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTGATGGTCTTTCCTGT 348762 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| |||||||||||||| Sbjct 348761 TAGAGTTTTCACAAAAATCTGCAT 348738 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | ||| || |||||||||||||||||||||||||| | | ||| | | ||| Sbjct 349633 AGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCATCC 349574 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || ||| | || |||| ||| || || || | || ||||| || Sbjct 349573 TCAAGCTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGTGGAATTCCTTCTTTATCC 349514 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | || || ||||| |||| ||| ||||| Sbjct 349513 TGAATTTTAGCCTTGACATTTTCAATCGTATCTGATGGCTCAACCTCCAAGGTAATGGTC 349454 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || ||||| ||||| |||||||| Sbjct 349453 TTGCCTGTGAGAGTTTTAACAAAGATCTGCAT 349422 Score = 82.4 bits (90), Expect = 6e-11 Identities = 163/238 (68%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 ||||| |||| || || || || | ||| || || || || ||||| || || ||||| Sbjct 348510 TACCC-CCTCTCAGTCTAAGGACAAGATGAAGAGTAGATTCTTTTTGGATATTATAGTCA 348452 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | || ||| | | || || | || || || ||| |||| | || |||||||| | Sbjct 348451 GACAACGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGA 348392 Query 16826 GGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | || |||||||| || || || ||| || | | | || || ||||| Sbjct 348391 GGGATTCCTTCTTTGTCCTGGATCTTAGC--CTTAACATTCTCAATGGTATCAGAGGGCT 348334 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTA 16941 || ||||| ||||||||| || || || | ||||| ||||| ||||||||||| || Sbjct 348333 CCACTTCCAAGGTGATGGTCTTGCCAGTTAATGTTTTCACAAAGATCTGCATTTTTTA 348276 >seq6499 Length=11414 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | ||| || |||||||||||||||||||||||||| | | ||| | | ||| Sbjct 4 AGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCATCC 63 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || ||| |||| | || ||| || || || | || |||||||| Sbjct 64 TCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCT 123 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | |||||| ||||| ||||| ||| || | Sbjct 124 TGGATCTTGGC--CTTCACATTCTCAATAGTGTCAGAAGGCTCTACTTCCAAGGTAATAG 181 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || ||||| ||||| |||||||| Sbjct 182 TCTTGCCAGTAAGTGTTTTTACAAAGATCTGCAT 215 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | ||| || |||||||||||||||||||||||||| | | ||| | | ||| Sbjct 1144 AGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCATCC 1203 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || ||| |||| | || |||||| || || | || ||||| || Sbjct 1204 TCAAGCTGTTTACCTGCAAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCC 1263 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | ||| || ||||| |||| ||| ||||| Sbjct 1264 TGAATTTTAGCCTTGACATTTTCAATAGTATCTGATGGCTCAACCTCCAAGGTAATGGTC 1323 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || || ||||| |||||||| Sbjct 1324 TTGCCTGTGAGAGTCTTAACAAAGATCTGCAT 1355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405002974813780