Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1757 127 1e-24 seq3454 122 6e-23 seq803 122 6e-23 seq684 122 6e-23 seq64 105 4e-18 seq6499 98.7 7e-16 seq26 82.4 5e-11 >seq1757 Length=269464 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| ||||||| |||||||||||| ||||| || |||||||| Sbjct 67870 AAGCCCGTTCCCTTGGCCGTGGTTTTGCTAGATAGTAGGTAGGGACAGAGGGAATCTCGT 67811 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 67810 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 67776 Score = 98.7 bits (108), Expect = 7e-16 Identities = 71/82 (87%), Gaps = 5/82 (6%) Strand=Plus/Plus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962 ||||||||||| ||||||||||||||||| || ||||| || |||||||||||||| Sbjct 12012 GTTCCCTTGGCCGTGGTTTCGCTAGATAGCAGGTAGGGACAGAGGGAATCTCGTTAATCC 12071 Query 25963 TTTCATGCGCGTCACTAATTAG 25984 ||||| ||||||||||||||| Sbjct 12072 ATTCATACGCGTCACTAATTAG 12093 >seq3454 Length=77798 Score = 122 bits (134), Expect = 6e-23 Identities = 202/287 (70%), Gaps = 10/287 (3%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 ||||| ||||| ||||| ||||||||||| ||||| || | | || ||||| || Sbjct 24796 CCGACCAAATACTTCGGCTGCGAACTTGGAGCTCAAACTCTTGTAGACTTTAAAAATGAC 24855 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 ||||| || || || ||||||||| | || | || || || || | ||||| || ||| Sbjct 24856 CGCTTTATTGTGAATGGATCGCATGATGCTACAAAACTTCAAGATCTTCTTGATGGGTTT 24915 Query 6441 ATTCGCAAG---TTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 ||| ||| ||||| || || | ||||| ||||| || ||||| || || | || Sbjct 24916 ATT---AAGCGTTTTGTTCTTTGCCCTGAATGTGATAATCCAGAGACAGATCTCCT--TG 24970 Query 6498 TCTAC-CAAGAGAA-ACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGC 6555 || || ||| | || | || ||||| || || |||||||| || |||| |||||| | Sbjct 24971 TCAACTCAAAAAAAGAAACTATCTCACAAGGGTGCAAAGCCTGTGGTTTCCATGGTCAAT 25030 Query 6556 TGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 || | || || ||||| || || | ||| | |||||||| ||| Sbjct 25031 TGCAGTTCAATCATAAACTTAATACATACATCTTAAAGAATCCACCA 25077 Score = 100 bits (110), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| ||| |||| || || | | | | || || || ||||||||||||||||| Sbjct 21345 ATGGGAACCGTGAATGTGAACAGGAGCATCACTGATGCTTTTTACCGCTACAAAATGCCT 21404 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||| | ||||| || |||||||| ||||| || || || ||||| ||||| |||||| Sbjct 21405 CGCCTTCAGGCCAAAGTTGAGGGTAAAGGAAATGGAATCAAGACCGTTATTGTGAACATG 21464 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCT 6311 |||| || |||||||| || ||| | ||| Sbjct 21465 GCTGATGTTGCTAAGGCCCTTGGAAGACCT 21494 >seq803 Length=464868 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||| |||||||||||||||||||| ||| | || |||||||| Sbjct 410814 AAGCCCGTTCCCTTGGTCGTGGTTTCGCTAGATAGTAGGTAGAGACAGAGGGAATCTCGT 410873 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 410874 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 410908 >seq684 Length=498857 Score = 122 bits (134), Expect = 6e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| || || ||||||||| || ||||||||||| || |||||||| || | Sbjct 348952 CGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAGACAAGGTTCGGCCA 348893 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || ||||||||||| || ||||| ||||| | || ||||| | || | |||||||| Sbjct 348892 TCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAGGAATACCTTCTTTA 348833 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| ||||||| |||||||| | | |||||| |||||||| || || || Sbjct 348832 TCCTGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTGATG 348773 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || | |||||||| || |||||||| Sbjct 348772 GTCTTTCCTGTTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 116 bits (128), Expect = 2e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||||||| || || ||||| ||||||||||| | | | | | || || | || Sbjct 349169 ATGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGCTG 349110 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 |||||| |||||||| | | |||||||| | |||| ||||||||||| || || Sbjct 349109 TTTTCCAGCAAATATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTT 349050 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| ||||| | | ||| || |||||||||||||||||||||||| || || Sbjct 349049 AGCCTTGACATTTTCAATAGTGTCAGATGGTTCAACTTCTAATGTAATAGTTTTGCCAGT 348990 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 | |||||||| || |||||||| Sbjct 348989 AAGAGTTTTCACAAAAATCTGCAT 348966 Score = 98.7 bits (108), Expect = 7e-16 Identities = 166/240 (69%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||||| | | || | ||||||||| || ||||| ||||| || |||| Sbjct 348510 TACCCCCTCTCAGTCTAAGGACAAGATGAAGAGTAGATTCTTTTTGGATATTATAGTCAG 348451 Query 38149 ACAAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 |||| |||||| || || | || ||||| ||||| || | | |||||| || Sbjct 348450 ACAA----CGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGTTGGTCT 348395 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | |||| |||||||||||| || || ||| ||||||| | ||||| Sbjct 348394 GGAGGGATTCCTTCTTTGTCCTGGATCTTAGCCTTAACATTCTCAATGGTATCAGAGGGC 348335 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTAC 38324 || ||||| || || || || || || || || |||||||| || |||||||| |||||| Sbjct 348334 TCCACTTCCAAGGTGATGGTCTTGCCAGTTAATGTTTTCACAAAGATCTGCATTTTTTAC 348275 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||||||||| | || | ||| || ||| ||||||||| || ||||| || | Sbjct 349650 TACCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTG 349591 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | | | || || | ||||| || ||||| ||||| | || ||||| | | Sbjct 349590 AGAGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGTG 349531 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| ||| |||||| ||| ||||| | | |||||| |||| Sbjct 349530 GAATTCCTTCTTTATCCTGAATTTTAGCCTTGACATTTTCAATCGTATCTGATGGCTCAA 349471 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| || || || || | ||||| || || |||||||| Sbjct 349470 CCTCCAAGGTAATGGTCTTGCCTGTGAGAGTTTTAACAAAGATCTGCAT 349422 >seq64 Length=1221219 Score = 105 bits (116), Expect = 4e-18 Identities = 81/96 (84%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 || || ||| || |||| |||||||||||||||||||||||||| | ||||| Sbjct 1142672 AAACCTGTTTCCGTGGCCGTGGTTTCGCTAGATAGTAGATAGGGATAGAAGGCATCTCAG 1142613 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGAT 25992 |||||||||||||||||||||||||||||||||||| Sbjct 1142612 TAATCCTTTCATGCGCGTCACTAATTAGATGACGAT 1142577 >seq6499 Length=11414 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||||||||| | || | ||| || ||| ||||||||| || ||||| || | Sbjct 1127 TACCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTG 1186 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | | | || || | ||||| || ||||| || | | |||||||| | | Sbjct 1187 AGAGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAAATCAACCTCTGTTGATCTGGTG 1246 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| ||| |||||| ||| ||||| | | ||||||| |||| Sbjct 1247 GGATTCCTTCTTTATCCTGAATTTTAGCCTTGACATTTTCAATAGTATCTGATGGCTCAA 1306 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| || || || || | || || || || |||||||| Sbjct 1307 CCTCCAAGGTAATGGTCTTGCCTGTGAGAGTCTTAACAAAGATCTGCAT 1355 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | | || | |||||||| || || ||||| || || |||| Sbjct 671 TACCACCTCTCAACCTAAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAG 730 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| |||| ||||| || ||||| ||||| || || | || ||||| | | Sbjct 731 AGAGAGTACGGCCGTCTTCTAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAG 790 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| ||| ||| ||| |||||||| | | ||||| || | Sbjct 791 GAATACCTTCTTTATCCTGAATCTTTGCTTTCACATTTTCAATCGTATCAGATGGCTCGA 850 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||||| || || || || || || | ||||| || || ||||||||| Sbjct 851 CTTCTAAGGTGATGGTCTTTCCTGTGAGAGTTTTGACAAAGATCTGCATG 900 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||||||| || | |||| |||||| || |||||||||||| ||||||||||| Sbjct 445 CCTCCTCTCAATCGAAGGACCAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAG 504 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | | | || || | || || || || || || | | || ||||| | || Sbjct 505 AGAGTTCTTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGTGGA 564 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| || || ||||||||||| | ||||||| || ||| Sbjct 565 ATTCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATAGTATCTGATGGCTCTACT 624 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || ||||| || || || | ||||| || || || ||||| Sbjct 625 TCCAGGGTGATAGTCTTGCCAGTAAGTGTTTTTACAAAGATTTGCAT 671 >seq26 Length=1349091 Score = 82.4 bits (90), Expect = 5e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||| |||| |||||||| ||| ||||| |||| | Sbjct 1007252 CTCTCTCTTCAAAGTTCTTTTCAACTTCTCCTCGCGGTACTTATTCTCTATCAGTCTTGT 1007311 Query 20007 GGTAATATTT 20016 ||| ||||| Sbjct 1007312 GGTTTTATTT 1007321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334876896885482