Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4446 111 2e-19 seq295 105 8e-18 seq11114 86.0 8e-12 >seq4446 Length=45416 Score = 111 bits (122), Expect = 2e-19 Identities = 93/113 (82%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 33141 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33200 ||| |||| |||| ||| |||||||| ||||||||||||| || || || ||||| ||| Sbjct 5410 ATACCTTT-GATAAATCAACTTCTTCTGCTGTCCAAAATGAAGCTTCGGCTTTTTTGTAC 5352 Query 33201 ATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 || ||||| || |||||||||| ||| ||||| ||||||||||| |||| || Sbjct 5351 ATCTTCCAAATATCATGATATTCAATGGGAAATATAACAAATCTTCTTGGGTT 5299 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 32311 TTCTTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTC--TTGA-GACATAACTCCCA 32367 || ||||||| ||| |||| | || |||| | | ||| | |||| ||||| || || Sbjct 20947 TTATTTAAAAATCAGCATCCAAAGTAAAAACACTTTCTGCCTTTGATGACATCACGCCAG 20888 Query 32368 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 32427 ||| |||||||||||||| ||| || || ||||||||||| ||||| | ||| |||| Sbjct 20887 CTTTCTGGTATTCACCCACTTTTTTCTCAAAGAAATTAGTTTTGCCTTCAAGTGAAATAT 20828 Query 32428 TTTCCATGAAATCGAATGGATTGGTAACATTATA 32461 |||||||| || ||||| || || |||| || Sbjct 20827 GCTCCATGAAGTCAAATGGGTTTGTTGCATTGTA 20794 >seq295 Length=498498 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62791 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 62850 ||||| || ||| ||||||||||||||||||||||| || ||||||| ||||| ||| || Sbjct 334499 ATATTCTACTATTTCAGTGCAAAGATTACTACACTTAATAGTTCCTAGATTTTTTTGGTT 334558 Query 62851 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910 || | ||||||||||| || || | ||| | || ||| ||||||| |||| Sbjct 334559 TGATTTCCTATTACACGCATCTTTGTATAACATGTAAGGGACACCTGTTTCAACTTGAGC 334618 Query 62911 TTCTATAATCGCTTTCCA 62928 ||||| || |||||||| Sbjct 334619 CTCTATTATGGCTTTCCA 334636 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63473 GCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63532 ||||||||||||||||||||||| ||||| || || ||||| | |||||||| || Sbjct 347896 GCATTAAATAAGGTAGGAGAAGCATGAGTGAAATATCCCTCAGATAAGAGATTGTAGGTA 347955 Query 63533 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63592 ||||||| || ||||| |||||| || || || || | ||| |||||||| Sbjct 347956 GTAATAGCTTCATCAATATCTTCCCCATGAATACCAACAGCCACTCTCATCAACATGTGT 348015 Query 63593 TGAGGTCTTTCAAC 63606 || || ||||| || Sbjct 348016 TGTGGCCTTTCTAC 348029 Score = 82.4 bits (90), Expect = 1e-10 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || |||||||| ||||| | || | || || || ||||| || || ||||| | | Sbjct 324043 ACCTGAAATTCCCCAGAGAGAACACGCCTAGAATATATATTTGATGTGTATGGTTCGAAA 324102 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||| ||||| | ||||| ||||||||||| || ||||| || || | ||||| | Sbjct 324103 GACTCATTGTTTCCAAGTATTTGGGCAGTTGATGCTGTAGGCATTGGAGCAATCAATAGA 324162 Query 62312 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAG 62351 ||| | ||||| | | ||||| ||||| |||| Sbjct 324163 GAGTTTTTTAGACCATTAGCCAATATTTTTTCTTTCAGAG 324202 Score = 82.4 bits (90), Expect = 1e-10 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 || |||||||| || |||| ||||| || |||||||| | || ||||||||||||| | Sbjct 344713 TTATTTCCTCCTTGGTCTACATATCTTGCAGTGTTATTGAATACCCTCAACATTGGAACA 344772 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA 63340 || ||||| ||| | ||||| || || | ||| | | || ||| |||||| | | Sbjct 344773 ATTCCATTTGATATTCCATTAGTTCCAGCAATAAATGTCCCTTTGGAACGAATGCAATGA 344832 Query 63341 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 63400 || | || || || || || |||| || || | || | | || || |||| Sbjct 344833 ATGTGCAATCCAATACCACCAGCAGTTTTGGATATGAGAGCTGTTTGCTTCAAAGTATTG 344892 Query 63401 TAGATGCCCTCTATACTATCATC 63423 || ||||| || ||||| ||||| Sbjct 344893 TAAATGCCTTCAATACTGTCATC 344915 >seq11114 Length=6469 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | |||||| ||||||||||||| |||||| || || ||||| || || || | Sbjct 821 CACTGAAAACTTTTTTAGTTTCTTTGTGTAAATTTGAAACAGCAATTCTGGCAGCGAGCA 880 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 |||||||| ||||| | ||||| || || || |||| || || | | | || | Sbjct 881 ATGCATAATCTGGATGCTTAGTAGTCATTGTAGCAGCAGTTTCTGCGGCTAAATTATCTA 940 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAA 63986 |||| || || | ||| ||| ||| | || ||||| ||||| | |||| || Sbjct 941 ATTCAACTGTGGATACTCCAGGATAAAGCCCAGATATAACTTTCATTGTAATTTCAA 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633495594871200