Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq684 138 1e-27 seq6499 107 2e-18 >seq684 Length=498857 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | || || || ||||||| | ||||| ||| | ||| Sbjct 348738 ATGCAGATTTTTGTGAAAACTCTAACAGGAAAGACCATCACCTTGGAAGTTGAGCCATCT 348797 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || |||| ||||||| ||| || |||||||| ||||| || || || Sbjct 348798 GATACTATTGAAAATGTGAAAGCAAAAATTCAG-GATAAAGAAGGTATTCCTCCAGATCA 348856 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || |||||||||||||||| || || || || || || Sbjct 348857 GCAGAGGCTAATCTTTGCAGGTAAACAATTAGAAGATGGCCGAACCTTGTCTGACTATAA 348916 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||||||| || || ||||| Sbjct 348917 TATTCAAAAAGAATCCACTCTTCACTTAGT 348946 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| |||||| | || || || | || || | || ||||| | || Sbjct 349193 AATGCAAATTTTTGTTAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTGGAACCCTC 349252 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||| || | ||| |||||| ||||| ||||||||||| ||||| || Sbjct 349253 TGACACTATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGGATTCCCCCTGATCA 349312 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | |||||||| ||||| || || || |||| ||| || | || || || Sbjct 349313 GCAACGATTAATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACATTATCTGACTATAA 349372 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| ||||| || || ||| | || || ||| |||||||||| Sbjct 349373 TATTCAAAAGGAATCTACTCTGCATCTTGTCCTTAGGTTAAGAGGAGG 349420 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || ||| | || || ||| | || ||| | ||||| || | || Sbjct 348965 AATGCAGATTTTTGTGAAAACTCTTACTGGCAAAACTATTACATTAGAAGTTGAACCATC 349024 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||| || | ||| || ||| ||||||||||| || ||||| || || Sbjct 349025 TGACACTATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCACCAGATCA 349084 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || ||||| || ||||| | ||||||| | ||| | |||||||| Sbjct 349085 ACAGAGGTTGATATTTGCTGGAAAACAGCTTGAAGATGGAAGAACTCTCTCTGATTACAA 349144 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| ||||||||||| || ||| | || || |||| | ||||||| Sbjct 349145 CATTCAGAAAGAATCCACTCTTCATCTTGTTCTTCGGCTCCGTGGAGGAA 349194 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||||| || ||||| || || || || || || ||||||| | ||||||||| | Sbjct 348278 AAAAATGCAGATCTTTGTGAAAACATTAACTGGCAAGACCATCACCTTGGAAGTGGAGCC 348337 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || ||| | ||| || ||| ||||||||||| || || || || Sbjct 348338 CTCTGATACCATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGAATCCCTCCAGA 348397 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | |||||||| || || || | ||||||| || || || || || Sbjct 348398 CCAACAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACGTTGTCTGACTA 348457 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||||||||| || || ||| | || || || || ||||| || Sbjct 348458 TAATATCCAAAAAGAATCTACTCTTCATCTTGTCCTTAGACTGAGAGGGGG 348508 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||||||| | || || || ||||||| | ||||| ||| ||||| Sbjct 348510 ATGCAGATCTTTGTAAAGACTCTCACAGGCAAGACCATCACCTTGGAAGTTGAGCCGTCT 348569 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | || || |||| ||| || |||||||| || || || ||||| Sbjct 348570 GATACAATTGAAAATGTTAAGGCGAAAATTCA-GGATAAAGAAGGAATCCCCCCAGACCA 348628 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || ||||| || || ||||| ||||||| || ||| | || || || Sbjct 348629 ACAGAGGTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGTACTCTTTCAGACTATAA 348688 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || ||||| || || || ||| | || || | || ||||| || Sbjct 348689 TATCCAGAAAGAGTCTACTCTCCATCTTGTCCTTCGACTCAGAGGTGG 348736 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || ||||||| | ||||| ||| | ||| Sbjct 350106 ATGCAGATCTTTGTTAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTTGAGCCATCT 350165 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| | || |||| || | ||| ||||||||||| |||||||| || Sbjct 350166 GACACCATCGAA--AATGTAAAAGCCAAGATTCAA-GACAAAGAAGGAATTCCACCAGAT 350222 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || || || | ||||||| || || | || || Sbjct 350223 CAGCAGAGGTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACGCTCTCTGACTAT 350282 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || || || |||||||| || Sbjct 350283 AACATTCAAAAAGAGTCAACTCTCCATTTAGTTCT 350317 >seq6499 Length=11414 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || | || || || | ||||| | ||||| ||| | || Sbjct 671 ATGCAAATCTTTGTAAAAACACTTACTGGCAAGACTATCACCCTGGAAGTAGAGCCATCA 612 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| ||| ||||| || ||| ||||||||||| |||||||| || || Sbjct 611 GATACTATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAG 552 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || || || || | ||||||| | ||| | |||||||| Sbjct 551 CAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAAGATGGAAGAACTCTCTCTGATTACAAC 492 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| || || ||||| ||| | || || | | |||||||| Sbjct 491 ATTCAAAAGGAGTCAACGCTTCATCTGGTCCTTCGATTGAGAGGAGG 445 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || ||||| |||| || | ||||||||| ||||| Sbjct 443 ATGCAAATCTTTGTTAAAACACTCACTGGTAAGACCATAACCCTGGAAGTGGAGCCGTCT 384 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| | || |||| || | || || || ||||| ||||| || || Sbjct 383 GACACAATCGAA--AATGTAAAAGCTAAGATACAG-GATAAGGAAGGTATTCCTCCAGAT 327 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || || || || || || | ||||||| || || | || ||| Sbjct 326 CAGCAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAAGATGGACGTACACTCTCAGACTAC 267 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| || || || || ||| | || || || |||||||||| Sbjct 266 AATATTCAAAAGGAGTCAACCCTCCATCTTGTCCTTAGATTAAGAGGAGG 217 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || | || || || | || || | ||||| ||| | ||| Sbjct 215 ATGCAGATCTTTGTAAAAACACTTACTGGCAAGACTATTACCTTGGAAGTAGAGCCTTCT 156 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| ||||| || ||| ||||||||||| || ||||| || || Sbjct 155 GACACTATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATCAG 96 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | |||||||| || ||||| | || |||| | ||| | || ||||| Sbjct 95 CAGAGGTTGATTTTTGCAGGTAAACAGCTTGAGGATGGAAGAACTCTCTCAGACTACAAC 36 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || ||| | || || Sbjct 35 ATACAAAAGGAGTCCACACTCCATCTTGTACT 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433237047431930