Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq684 140 3e-28 seq6499 95.1 1e-14 >seq684 Length=498857 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| |||||| |||| || || || |||| | ||||| || | | Sbjct 348738 ATGCAGATTTTTGTGAAAACTCTAACAGGAAAGACCATCACCTTGGAAGTTGAGCCATCT 348797 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||| || || || |||||||| || ||||| Sbjct 348798 GATACTATTGAAAATGTGAAAGCAAAAATTCAGGATAAAGAAGGTATTCCTCCAGATCAG 348857 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || ||||| ||||| ||| ||| ||| | || || || || Sbjct 348858 CAGAGGCTAATCTTTGCAGGTAAACAATTAGAAGATGGCCGAACCTTGTCTGACTATAAT 348917 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||||||||||||||| | || ||||||||||| Sbjct 348918 ATTCAAAAAGAATCCACTCTTCACTTAGTTTTGCG 348952 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | || || || || | |||||||| |||||| || | Sbjct 349194 ATGCAAATTTTTGTTAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTGGAACCCTCT 349253 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||||| ||||||||||| || ||||| || ||||| Sbjct 349254 GACACTATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGGATTCCCCCTGATCAG 349313 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || ||||| ||||| ||||| |||||| || || | || || || || Sbjct 349314 CAACGATTAATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACATTATCTGACTATAAT 349373 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| ||||| || Sbjct 349374 ATTCAAAAGGAATCTAC 349390 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| ||| | || || || || |||| | ||||| || | | Sbjct 350106 ATGCAGATCTTTGTTAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTTGAGCCATCT 350165 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || ||||||||||| || || |||||||| ||||| Sbjct 350166 GACACCATCGAAAATGTAAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 350225 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||| | || ||| ||| || |||| || || ||| Sbjct 350226 CAGAGGTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACGCTCTCTGACTATAAC 350285 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 ||||||||||| || || | ||||||||| ||||| | || ||||||| Sbjct 350286 ATTCAAAAAGAGTCAACTCTCCATTTAGTTCTGCGACTTCGTGGAGGTT 350334 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| |||||| | || || ||||| | || | ||||| ||| | | Sbjct 348966 ATGCAGATTTTTGTGAAAACTCTTACTGGCAAAACTATTACATTAGAAGTTGAACCATCT 349025 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || |||||||| || || || ||||| |||||| Sbjct 349026 GACACTATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCACCAGATCAA 349085 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | |||||||| || |||||| | || ||| | || |||| ||||||||| Sbjct 349086 CAGAGGTTGATATTTGCTGGAAAACAGCTTGAAGATGGAAGAACTCTCTCTGATTACAAC 349145 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||||||||| | ||| | ||| | || | || ||||| Sbjct 349146 ATTCAGAAAGAATCCACTCTTCATCTTGTTCTTCGGCTCCGTGGAGG 349192 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||||||| | || || || || | || | || || || | | Sbjct 349422 ATGCAGATCTTTGTTAAAACTCTCACAGGCAAGACCATTACCTTGGAGGTTGAGCCATCA 349481 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| |||||||| || || || || |||||||| ||||| Sbjct 349482 GATACGATTGAAAATGTCAAGGCTAAAATTCAGGATAAAGAAGGAATTCCACCAGATCAG 349541 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || |||||| | |||||| | || |||| || |||||| Sbjct 349542 CAGAGGCTAATCTTTGCAGGTAAACAGCTTGAGGATGGAAGAACTCTCTCAGACTACAAC 349601 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || ||||| | ||| | || | || ||| | |||||| Sbjct 349602 ATACAAAAGGAGTCCACACTCCATCTTGTACTTCGTTTGAGAGGAGGT 349649 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| ||||| ||||| || || || |||| | |||||||| | Sbjct 348278 AAAAATGCAGATCTTTGTGAAAACATTAACTGGCAAGACCATCACCTTGGAAGTGGAGCC 348337 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | |||||| | || || | || || || || ||||| || || || || || || Sbjct 348338 CTCTGATACCATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGAATCCCTCCAGA 348397 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||| | | || ||||| || || ||| | || ||| ||| || | || || || Sbjct 348398 CCAACAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACGTTGTCTGACTA 348457 Query 22395 CAACATTCAAAAAGAATCCAC 22415 || || ||||||||||| || Sbjct 348458 TAATATCCAAAAAGAATCTAC 348478 >seq6499 Length=11414 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || || || || |||| || ||||| || | | Sbjct 671 ATGCAAATCTTTGTAAAAACACTTACTGGCAAGACTATCACCCTGGAAGTAGAGCCATCA 612 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || || |||||||| || || |||||||| ||||| Sbjct 611 GATACTATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAG 552 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || ||| | || ||| | || |||| ||||||||| Sbjct 551 CAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAAGATGGAAGAACTCTCTCTGATTACAAC 492 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || || | ||| | || | |||||| | ||||| Sbjct 491 ATTCAAAAGGAGTCAACGCTTCATCTGGTCCTTCGATTGAGAGGAGG 445 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| | || ||||| || | || || |||||||| | | Sbjct 443 ATGCAAATCTTTGTTAAAACACTCACTGGTAAGACCATAACCCTGGAAGTGGAGCCGTCT 384 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| || || || || ||||| |||||||| || ||||| Sbjct 383 GACACAATCGAAAATGTAAAAGCTAAGATACAGGATAAGGAAGGTATTCCTCCAGATCAG 324 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || ||| | || ||| || || |||| || ||||| Sbjct 323 CAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAAGATGGACGTACACTCTCAGACTACAAT 264 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || ||| | ||| | || | |||| | |||||| Sbjct 263 ATTCAAAAGGAGTCAACCCTCCATCTTGTCCTTAGATTAAGAGGAGGT 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419639901978430