Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq684 179 7e-40 seq6499 147 4e-30 seq1688 136 7e-27 >seq684 Length=498857 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| |||| || || || || || ||||||||||| |||||||| || ||| Sbjct 350332 CCTCCACGAAGTCGCAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAGTCAGAG 350273 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || | || || || || |||||| Sbjct 350272 AGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGA 350213 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||| || || || ||||||||||| | || || ||| Sbjct 350212 ATTCCTTCTTTGTCTTGAATCTTGGCTTTTACATTTTCGATGGTGTCAGATGGCTCAACT 350153 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || || || ||||| || || |||||||| Sbjct 350152 TCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 350106 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||||||||| || ||||| || ||||| |||||||| || ||||| || | Sbjct 348966 TTCCACCACGAAGGCGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAG 348907 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | ||||||||||| || || || || || || || || || || || || | Sbjct 348906 ACAAGGTTCGGCCATCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAG 348847 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| || || ||||| ||||| || || || || || || | || || | Sbjct 348846 GAATACCTTCTTTATCCTGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCAA 348787 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||||| ||||| || || || || || || |||||||| Sbjct 348786 CTTCCAAGGTGATGGTCTTTCCTGTTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || ||||||||||| ||||| || || | || | |||||||| | Sbjct 348489 CAAGATGAAGAGTAGATTCTTTTTGGATATTATAGTCAGACAACGTTCGGCCATCTTCAA 348430 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || | ||||||||||| || || || ||||| ||||| || | Sbjct 348429 GCTGCTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGGATTCCTTCTTTGTCCTGGA 348370 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||| || ||| ||||| || | | || ||||||||||||||||| || | Sbjct 348369 TCTTAGCCTTAACATTCTCAATGGTATCAGAGGGCTCCACTTCCAAGGTGATGGTCTTGC 348310 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | || || || || ||||||||| Sbjct 348309 CAGTTAATGTTTTCACAAAGATCTGCATT 348281 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || || ||||| ||||| || || || || || || | |||||||| || || Sbjct 349853 GTGGAGAGTAGATTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCTTCCAATTG 349794 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | || |||||||| || ||||| |||||||| ||||| || || Sbjct 349793 CTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGAATTCCTTCCTTATCTTGTATTTT 349734 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || || || ||||||||| || | | ||| ||||| || ||||||||||| || || Sbjct 349733 AGCTTTAACATTCTCGATGGTATCAGAGGGTTCCACTTCTAAAGTGATGGTTTTGCCAGT 349674 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 || || || || || |||||||| Sbjct 349673 AAGAGTTTTCACAAAAATCTGCAT 349650 Score = 132 bits (146), Expect = 9e-26 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || |||||||| ||||| ||||| || || || || | |||||||| | Sbjct 348717 CAAGATGGAGAGTAGACTCTTTCTGGATATTATAGTCTGAAAGAGTACGGCCATCTTCCA 348658 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | ||||| || || || || | || |||||||| || || || ||||| || || |||| Sbjct 348657 ATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATTCCTTCTTTATCCTGAA 348598 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || ||||| || || || || || | | || ||||||||||||||||| || | Sbjct 348597 TTTTCGCCTTAACATTTTCAATTGTATCAGACGGCTCAACTTCCAAGGTGATGGTCTTGC 348538 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| ||||| || || |||||||| Sbjct 348537 CTGTGAGAGTCTTTACAAAGATCTGCAT 348510 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || || ||||| ||||| || || || || || || | |||||||| || || Sbjct 350081 GTGGAGAGTAGATTCTTTCTGGATATTGTAGTCTGAAAGAGTACGTCCATCTTCCAATTG 350022 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | || |||||||| || || || ||||| || || ||||| || Sbjct 350021 CTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATACCTTCTTTATCCTGAATTTT 349962 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| || || || || || | || || ||||||||||||||||| || || || Sbjct 349961 CGCCTTAACATTTTCAATTGTATCAGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGT 349902 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 || ||||| ||||| |||||||| Sbjct 349901 AAGAGTCTTAACGAAGATCTGCAT 349878 Score = 107 bits (118), Expect = 4e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || || ||||| || ||||| || || | ||| | ||||| || | Sbjct 349401 CAAGATGCAGAGTAGATTCCTTTTGAATATTATAGTCAGATAATGTACGACCATCCTCCA 349342 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||||| || || || || | || ||| || || || ||||| |||||||||||||| | Sbjct 349341 ACTGCTTGCCAGCAAAAATTAATCGTTGCTGATCAGGGGGAATCCCTTCCTTGTCTTGGA 349282 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || ||||| || || || ||||| | | ||| || || | || || || || | Sbjct 349281 TTTTAGCCTTAACATTTTCAATAGTGTCAGAGGGTTCCACCTCAAGAGTAATAGTCTTGC 349222 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || || ||||| || || || |||||| Sbjct 349221 CAGTAAGAGTCTTAACAAAAATTTGCATT 349193 >seq6499 Length=11414 Score = 147 bits (162), Expect = 4e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || || ||||| || |||||||| || ||||| || | || ||||||||||| Sbjct 696 GTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAGAGAGAGTACGGCCGTCTTCTAACTG 755 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || || || || || || ||||| ||||| || || |||||||| Sbjct 756 CTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATACCTTCTTTATCCTGAATCTT 815 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||| || || || || || || | || || ||||| ||||||||||| ||||| || Sbjct 816 TGCTTTCACATTTTCAATCGTATCAGATGGCTCGACTTCTAAGGTGATGGTCTTTCCTGT 875 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 ||| || ||||| || |||||||| Sbjct 876 GAGAGTTTTGACAAAGATCTGCAT 899 Score = 132 bits (146), Expect = 9e-26 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| ||||| ||||| || || ||||| || || ||||| || | Sbjct 8 CAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCATCCTCAA 67 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| || || || || || | || || || || ||||| || ||||| |||||||| | Sbjct 68 GCTGTTTACCTGCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGGA 127 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||| || ||| || ||||| | | |||||||||||||| || || || | Sbjct 128 TCTTGGCCTTCACATTCTCAATAGTGTCAGAAGGCTCTACTTCCAAGGTAATAGTCTTGC 187 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || || || || |||||||| Sbjct 188 CAGTAAGTGTTTTTACAAAGATCTGCAT 215 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || |||||||| ||||| ||||| || || || || | |||||||| || || Sbjct 925 TGGAGAGTAGACTCTTTCTGGATATTATAGTCTGAAAGAGTACGACCATCTTCCAATTGT 984 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || | ||| ||||| || || || || || ||||| || || ||||| Sbjct 985 TTACCAGCGAAGATCAATCTCTGTTGATCTGGAGGGATTCCCTCCTTATCCTGTATCTTA 1044 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || ||||| || | | ||| ||||| || ||||||||||| || ||| Sbjct 1045 GCTTTAACATTTTCAATGGTATCAGAGGGTTCCACTTCTAAAGTGATGGTTTTACCTGTG 1104 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || ||||| || || |||||||| Sbjct 1105 AGTGTCTTCACAAAAATCTGCAT 1127 >seq1688 Length=171348 Score = 136 bits (150), Expect = 7e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| || || ||||| || || || || || |||||||| || || || || || || | Sbjct 124680 CTTTCTGAATATTATAGTCAGATAGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAAA 124621 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | | || || ||||| || ||||| |||||||| || |||||||| ||||| || | Sbjct 124620 TTAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTTT 124561 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 |||||||||||| | ||||| || | ||| || || || ||||||||||| ||||| | Sbjct 124560 CGATGGTGTCTGAAGGCTCTACCTCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACAA 124501 Query 68452 ATATCTGCAT 68461 | |||||||| Sbjct 124500 AAATCTGCAT 124491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921423997737840