Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq684 136 3e-27 seq6499 102 7e-17 >seq684 Length=498857 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||| || ||||||||| | || || |||||||||||||| || || Sbjct 350333 ACCTCCACGAAGTCGCAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAGTCAGA 350274 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||||| ||||||||| || |||||||| |||| | | ||| || || || || Sbjct 350273 GAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGG 350214 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| |||||| ||||| | ||| | |||||| | | || || Sbjct 350213 AATTCCTTCTTTGTCTTGAATCTTGGCTTTTACATTTTCGATGGTGTCAGATGGCTCAAC 350154 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | || ||||| || ||||| || ||||| |||||||| Sbjct 350153 TTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 350106 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||||||||| || | || |||||||||||||| || || || Sbjct 348967 ATTCCACCACGAAGGCGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCA 348908 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | ||||||||| || |||| || | ||| || || ||| Sbjct 348907 GACAAGGTTCGGCCATCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGA 348848 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || ||| ||| ||| | | ||||| || || | | || Sbjct 348847 GGAATACCTTCTTTATCCTGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCA 348788 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || || |||||||| |||||||||||||| Sbjct 348787 ACTTCCAAGGTGATGGTCTTTCCTGTTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | ||| | || |||||||| |||||||||||||| Sbjct 349195 ATTCCTCCACGGAGCCGAAGAACAAGATGAAGAGTGGATTCTTTCTGAATGTTGTAATCA 349136 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||||||| ||||| ||||| | || | | |||||| || || Sbjct 349135 GAGAGAGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAATATCAACCTCTGTTGATCTGGT 349076 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||| || | | ||||| ||||| | | ||| Sbjct 349075 GGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATAGTGTCAGATGGTTCA 349016 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||||| || |||||||| |||||||||||||| Sbjct 349015 ACTTCTAATGTAATAGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCAT 348966 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| | || || | ||| | || | ||||||||||| || || ||||| || Sbjct 349879 ATACCGCCTCTGAGCCTAAGAACAAGGTGGAGAGTAGATTCTTTCTGGATATTGTAGTCA 349820 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | ||| |||||||| |||| | | ||||||||| || Sbjct 349819 GAAAGAGTACGGCCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGG 349760 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTC 114331 ||||| ||||| || || || ||| | |||| | | || | ||| || | || ||| Sbjct 349759 GGAATTCCTTCCTTATCTTGTAT-TTTAGCTTTAACATTCTCGATGGTATCAGAGGGTTC 349701 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||||| || |||||||| |||||||||||||| Sbjct 349700 CACTTCTAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCAT 349650 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| | || || | ||| | || | ||||||||||| || || ||||| || Sbjct 350107 ATACCGCCTCTGAGCCTAAGAACAAGGTGGAGAGTAGATTCTTTCTGGATATTGTAGTCT 350048 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | ||| |||||||| |||| | | ||||||||| || Sbjct 350047 GAAAGAGTACGTCCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGG 349988 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || || |||||||| || ||| ||| | ||| | | ||||| || || | | || Sbjct 349987 GGGATACCTTCTTTATCCTGAAT-TTTCGCCTTAACATTTTCAATTGTATCAGATGGCTC 349929 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| || ||||| || || || |||||||| Sbjct 349928 AACTTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAACGAAGATCTGCAT 349878 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | ||||| | || | ||| | |||||||||||||| || || || || Sbjct 348511 ATACCCCCTCTCAGTCTAAGGACAAGATGAAGAGTAGATTCTTTTTGGATATTATAGTCA 348452 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||||||| || || ||||| | || | | |||||||| ||| Sbjct 348451 GACAACGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGA 348392 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||| || | | |||| ||| || | || || Sbjct 348391 GGGATTCCTTCTTTGTCCTGGATCTTAGCCTTAACATTCTCAATGGTATCAGAGGGCTCC 348332 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| || | ||||| ||||| |||||||| Sbjct 348331 ACTTCCAAGGTGATGGTCTTGCCAGTTAATGTTTTCACAAAGATCTGCAT 348282 >seq6499 Length=11414 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 |||| ||| | ||||| ||||| || || || || || | ||||||| |||||| Sbjct 919 ACTAGATGGAGAGTAGACTCTTTCTGGATATTATAGTCTGAAAGAGTACGACCATCTTCC 978 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | ||||||||||||| |||| | | |||||| || ||||| || || || || || Sbjct 979 AATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGAGGGATTCCCTCCTTATCCTGT 1038 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| ||| | | ||||| ||| || | || ||| || || | || | ||||| Sbjct 1039 ATCTTAGCTTTAACATTTTCAATGGTATCAGAGGGTTCCACTTCTAAAGTGATGGTTTTA 1098 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || || |||||||||||||| Sbjct 1099 CCTGTGAGTGTCTTCACAAAAATCTGCAT 1127 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||| | ||| || || ||||||||||||||||| | ||| | ||||||||| || Sbjct 468 ATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGCTG 527 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 ||||||||| |||| | | ||| || || || ||||| ||||||||||| ||||| Sbjct 528 CTTACCAGCGAAGATCAACCTCTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTT 587 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 || | | |||| || || | | || || |||| ||| | || ||||| || Sbjct 588 GGCCTTCACATTCTCAATAGTATCTGATGGCTCTACTTCCAGGGTGATAGTCTTGCCAGT 647 Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382 || ||||||||||| || ||||| Sbjct 648 AAGTGTTTTTACAAAGATTTGCAT 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420046216677864