Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq21 105 5e-18 seq282 98.7 8e-16 >seq21 Length=1250104 Score = 105 bits (116), Expect = 5e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 108465 GTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAA 108524 |||||||| || ||||| | |||||||||||||| |||||| || ||||| ||||| Sbjct 186314 GTGGGTGCGTGACCACAGATTGCACCACAAGTACTCGGACACGGATGCAGACCCGCACAA 186255 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGA 108584 | ||| | | || ||||||||||| ||| | || ||||| ||||||| ||| |||| || Sbjct 186254 CTCCACCCGCGGCTTCTGGTTCTCCCACATCGGCTGGCTGATGATGAAGAAGCACCCGGA 186195 Query 108585 CGTGAT 108590 ||||| Sbjct 186194 AGTGAT 186189 >seq282 Length=557931 Score = 98.7 bits (108), Expect = 8e-16 Identities = 94/118 (80%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACA-CGACGGCCGACCCACACAA 108524 ||||||| ||||| || ||||||||||| |||| |||| |||| || || |||||||| Sbjct 104977 TGGGTGCGTGATCATAGACTTCACCACAAGCACTCGGACACCGAC-GCGGATCCACACAA 105035 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCC 108582 ||| || || ||||||| ||||| ||||| || ||||| ||||||| || ||||| Sbjct 105036 CGCTAATAGAGGGTTCTTCTTCTCACACGTCGGCTGGCTAATGATGAGGAAACACCCC 105093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381692668513968